Variant report

Variant	rs41332747
Chromosome Location	chr8:19409791-19409792
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10107533	0.80[GIH][hapmap]
rs1014482	0.81[GIH][hapmap]
rs10503650	0.91[CEU][hapmap]
rs12334858	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17128602	0.81[CEU][hapmap]
rs17128621	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.82[YRI][hapmap]
rs17128626	1.00[CEU][hapmap]
rs17128650	0.91[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs17408321	1.00[CEU][hapmap]
rs17480050	0.90[GIH][hapmap]
rs17480272	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4298501	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs4601324	1.00[JPT][hapmap]
rs4606078	1.00[JPT][hapmap]
rs4921659	0.91[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap]
rs4922060	0.86[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap]
rs4922061	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7818368	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533109	chr8:18845845-19456780	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv949636	chr8:18957705-19664732	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv948861	chr8:19199688-19609029	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv949304	chr8:19199688-19625912	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	esv34007	chr8:19252602-19482098	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv890624	chr8:19319061-19456270	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv610753	chr8:19364883-19439977	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv1018057	chr8:19370830-19435399	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1016276	chr8:19374998-19435147	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1024012	chr8:19377703-19409791	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv890626	chr8:19383697-19483259	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv890627	chr8:19389865-19561997	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs41332747	ZDHHC2	cis	cerebellum	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19379400-19434200	Weak transcription	Placenta	Placenta
2	chr8:19398400-19410400	Weak transcription	Aorta	Aorta
3	chr8:19398400-19411800	Weak transcription	Primary B cells from cord blood	blood
4	chr8:19401400-19434000	Weak transcription	Hela-S3	cervix
5	chr8:19401600-19413000	Weak transcription	Brain Anterior Caudate	brain
6	chr8:19402400-19415000	Weak transcription	Brain Hippocampus Middle	brain
7	chr8:19407400-19410200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:19407800-19410400	Enhancers	Primary T cells from cord blood	blood
9	chr8:19408200-19409800	Weak transcription	A549	lung
10	chr8:19409000-19411600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr8:19409000-19411600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr8:19409000-19411800	Weak transcription	Ovary	ovary
13	chr8:19409000-19412000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:19409000-19412000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr8:19409000-19437400	Weak transcription	Gastric	stomach
16	chr8:19409200-19411600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr8:19409200-19412200	Weak transcription	Fetal Thymus	thymus
18	chr8:19409200-19412200	Weak transcription	Thymus	Thymus
19	chr8:19409200-19412800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr8:19409200-19413000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr8:19409200-19413000	Weak transcription	Fetal Brain Male	brain
22	chr8:19409200-19413200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr8:19409200-19413200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr8:19409200-19413400	Weak transcription	Right Atrium	heart
25	chr8:19409200-19414000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr8:19409200-19414000	Weak transcription	Right Ventricle	heart
27	chr8:19409200-19414200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr8:19409200-19414200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr8:19409200-19414600	Weak transcription	Left Ventricle	heart
30	chr8:19409200-19415800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:19409200-19418000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr8:19409200-19418000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr8:19409400-19414000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr8:19409400-19414800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr8:19409400-19415600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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