Variant report

Variant	rs41336846
Chromosome Location	chr7:33277176-33277177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10486518	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11976613	0.82[YRI][hapmap]
rs4723239	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs41336846	CRYBB2	trans	lymphoblastoid	seeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33273800-33283800	Weak transcription	Fetal Lung	lung
2	chr7:33276800-33277200	Enhancers	Brain Angular Gyrus	brain
3	chr7:33276800-33277200	Enhancers	Stomach Smooth Muscle	stomach
4	chr7:33276800-33277200	Enhancers	A549	lung
5	chr7:33276800-33277400	Enhancers	HUVEC	blood vessel
6	chr7:33276800-33277600	Enhancers	Brain Hippocampus Middle	brain
7	chr7:33276800-33277600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr7:33276800-33277800	Enhancers	Brain Anterior Caudate	brain
9	chr7:33276800-33277800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:33276800-33277800	Enhancers	Brain Substantia Nigra	brain
11	chr7:33277000-33277200	Enhancers	Stomach Mucosa	stomach
12	chr7:33277000-33277400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:33277000-33277400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:33277000-33277800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:33277000-33277800	Enhancers	Liver	Liver
16	chr7:33277000-33278000	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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