The 2.0 version of rSNPBase

Variant report

Variant rs41340844
Chromosome Location chr17:17120352-17120353
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:17109400-17120400 Weak transcription Fetal Kidney kidney
2 chr17:17109400-17131600 Weak transcription Fetal Heart heart
3 chr17:17109600-17124200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
4 chr17:17109800-17123200 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr17:17110000-17121000 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr17:17110400-17120400 Weak transcription Hela-S3 cervix
7 chr17:17111800-17120600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr17:17113200-17135200 Strong transcription Fetal Intestine Small intestine
9 chr17:17113200-17136600 Strong transcription Fetal Stomach stomach
10 chr17:17113400-17131400 Strong transcription Brain Anterior Caudate brain
11 chr17:17113400-17131400 Strong transcription Brain Substantia Nigra brain
12 chr17:17113400-17134600 Strong transcription Fetal Muscle Trunk muscle
13 chr17:17113400-17136200 Strong transcription Primary neutrophils fromperipheralblood blood
14 chr17:17113800-17134600 Strong transcription Fetal Muscle Leg muscle
15 chr17:17113800-17137600 Strong transcription Fetal Adrenal Gland Adrenal Gland
16 chr17:17114000-17122600 Strong transcription A549 lung
17 chr17:17114000-17131200 Strong transcription Liver Liver
18 chr17:17114000-17131200 Strong transcription Left Ventricle heart
19 chr17:17114000-17134800 Strong transcription Fetal Intestine Large intestine
20 chr17:17114000-17135200 Strong transcription Rectal Mucosa Donor 29 rectum
21 chr17:17114000-17136200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
22 chr17:17114000-17136200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr17:17114000-17136400 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr17:17114000-17136400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr17:17114000-17136400 Strong transcription Primary hematopoietic stem cells short term culture blood
26 chr17:17114000-17136400 Strong transcription Placenta Placenta
27 chr17:17114000-17136600 Strong transcription Monocytes-CD14+_RO01746 blood
28 chr17:17114200-17131600 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr17:17114200-17131600 Strong transcription Spleen Spleen
30 chr17:17114200-17136600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
31 chr17:17114400-17131400 Strong transcription Lung lung
32 chr17:17114400-17136200 Strong transcription Primary T cells from cord blood blood
33 chr17:17114400-17136200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr17:17114400-17136400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr17:17114400-17136600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr17:17114600-17121000 Strong transcription Duodenum Smooth Muscle Duodenum
37 chr17:17114600-17121600 Strong transcription Primary B cells from cord blood blood
38 chr17:17114600-17134800 Strong transcription Duodenum Mucosa Duodenum
39 chr17:17114600-17136000 Strong transcription Fetal Brain Female brain
40 chr17:17114600-17136200 Strong transcription NHLF lung
41 chr17:17114600-17136400 Strong transcription HUES6 Cell Line embryonic stem cell
42 chr17:17114600-17136400 Strong transcription HUES64 Cell Line embryonic stem cell
43 chr17:17114600-17136400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr17:17114600-17136400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr17:17114600-17136400 Strong transcription Primary monocytes fromperipheralblood blood
46 chr17:17114600-17136400 Strong transcription Primary T helper naive cells fromperipheralblood blood
47 chr17:17114600-17136600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
48 chr17:17114800-17131800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr17:17114800-17136400 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
50 chr17:17114800-17136400 Strong transcription Osteobl bone

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Last update: Aug 31, 2015