The 2.0 version of rSNPBase

Variant report

Variant rs4135013
Chromosome Location chr17:38450261-38450262
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:38444600-38451600 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr17:38444600-38454600 Weak transcription Ovary ovary
3 chr17:38444600-38459400 Weak transcription Brain Angular Gyrus brain
4 chr17:38444600-38459400 Weak transcription Spleen Spleen
5 chr17:38444600-38459600 Weak transcription Brain Anterior Caudate brain
6 chr17:38444600-38459600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr17:38444600-38459600 Weak transcription Placenta Amnion Placenta Amnion
8 chr17:38444800-38451800 Weak transcription Fetal Brain Female brain
9 chr17:38444800-38459200 Weak transcription Fetal Intestine Large intestine
10 chr17:38444800-38459400 Weak transcription Fetal Kidney kidney
11 chr17:38444800-38459400 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr17:38444800-38459600 Weak transcription Right Ventricle heart
13 chr17:38444800-38459600 Weak transcription Stomach Smooth Muscle stomach
14 chr17:38444800-38462600 Weak transcription Esophagus oesophagus
15 chr17:38445000-38452000 Weak transcription Fetal Intestine Small intestine
16 chr17:38445000-38459600 Weak transcription Colonic Mucosa Colon
17 chr17:38445400-38451800 Weak transcription Primary hematopoietic stem cells blood
18 chr17:38445400-38452000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr17:38445400-38459400 Weak transcription Primary T cells from cord blood blood
20 chr17:38445400-38459400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
21 chr17:38445600-38457400 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr17:38445600-38459600 Weak transcription Primary B cells from cord blood blood
23 chr17:38445600-38460200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr17:38445600-38462600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
25 chr17:38445800-38451600 Strong transcription HUES6 Cell Line embryonic stem cell
26 chr17:38445800-38457200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr17:38446000-38451800 Weak transcription Brain Germinal Matrix brain
28 chr17:38446000-38452400 Strong transcription HUES64 Cell Line embryonic stem cell
29 chr17:38446000-38459400 Strong transcription Fetal Thymus thymus
30 chr17:38446000-38461000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr17:38446200-38450800 Strong transcription iPS DF 6.9 Cell Line embryonic stem cell
32 chr17:38446400-38450600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr17:38446600-38451000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr17:38447000-38451000 Strong transcription H1 Cell Line embryonic stem cell
35 chr17:38447000-38454600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
36 chr17:38447000-38454600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr17:38447000-38459200 Strong transcription Primary hematopoietic stem cells short term culture blood
38 chr17:38447000-38459200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr17:38447000-38459600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
40 chr17:38447000-38459600 Weak transcription Placenta Placenta
41 chr17:38447200-38454200 Weak transcription Fetal Heart heart
42 chr17:38447200-38459200 Weak transcription Liver Liver
43 chr17:38447200-38459400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr17:38447400-38452200 Weak transcription Muscle Satellite Cultured Cells --
45 chr17:38447400-38453400 Strong transcription NHEK skin
46 chr17:38447400-38455000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr17:38447400-38458800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
48 chr17:38447400-38459200 Weak transcription Rectal Smooth Muscle rectum
49 chr17:38447400-38459200 Strong transcription A549 lung
50 chr17:38447600-38452200 Weak transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015