Variant report

Variant	rs4135141
Chromosome Location	chr12:104380895-104380896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560039	chr12:104177668-104455340	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv427922	chr12:104325583-104523096	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv2341266	chr12:104379399-104380904	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region lncRNA miRNA target site	1 gene(s)	inside rSNPs	n/a
4	esv3367328	chr12:104379622-104382920	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a
5	esv3415317	chr12:104379622-104383320	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a
6	nsv973112	chr12:104380761-104381760	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	lncRNA miRNA target site	n/a	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104360800-104381000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:104361600-104385000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:104362000-104382600	Weak transcription	Esophagus	oesophagus
4	chr12:104362000-104384400	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr12:104362000-104392800	Weak transcription	Fetal Brain Male	brain
6	chr12:104362200-104384800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr12:104363800-104382400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr12:104364000-104381000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:104364600-104383800	Strong transcription	Dnd41	blood
10	chr12:104366600-104383600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr12:104366800-104381600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr12:104367600-104381000	Strong transcription	GM12878-XiMat	blood
13	chr12:104368800-104381000	Strong transcription	Primary hematopoietic stem cells	blood
14	chr12:104368800-104381600	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr12:104369200-104381000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:104369200-104381000	Strong transcription	Fetal Muscle Trunk	muscle
17	chr12:104369200-104381000	Strong transcription	Stomach Smooth Muscle	stomach
18	chr12:104369200-104383800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr12:104369400-104381000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr12:104369400-104381000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr12:104369600-104381600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr12:104369800-104383600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr12:104370000-104381600	Strong transcription	Fetal Thymus	thymus
24	chr12:104370200-104381000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr12:104370200-104381000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr12:104370200-104381000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr12:104370200-104384600	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr12:104370400-104381000	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr12:104370400-104381000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr12:104370400-104381000	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr12:104370400-104381000	Strong transcription	HSMM	muscle
32	chr12:104370400-104381000	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr12:104370400-104383600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr12:104370400-104385000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr12:104370400-104385600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr12:104370600-104381000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr12:104370600-104381000	Strong transcription	Duodenum Mucosa	Duodenum
38	chr12:104370600-104381000	Strong transcription	Fetal Intestine Large	intestine
39	chr12:104370600-104381000	Strong transcription	Fetal Muscle Leg	muscle
40	chr12:104370600-104381000	Strong transcription	Placenta	Placenta
41	chr12:104370600-104384000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr12:104370600-104385000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr12:104370800-104381000	Strong transcription	Liver	Liver
44	chr12:104370800-104381200	Strong transcription	Adipose Nuclei	Adipose
45	chr12:104370800-104381600	Strong transcription	Fetal Lung	lung
46	chr12:104370800-104381600	Strong transcription	Left Ventricle	heart
47	chr12:104371000-104381000	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr12:104371000-104381000	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr12:104371000-104381000	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr12:104371000-104381000	Strong transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links