Variant report

Variant	rs41352048
Chromosome Location	chr8:112727926-112727927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10096492	0.88[ASN][1000 genomes]
rs10096581	0.86[ASN][1000 genomes]
rs10105047	0.88[ASN][1000 genomes]
rs10105260	0.88[ASN][1000 genomes]
rs10109798	0.88[ASN][1000 genomes]
rs10112546	0.88[ASN][1000 genomes]
rs10112569	0.86[ASN][1000 genomes]
rs12678341	0.88[ASN][1000 genomes]
rs1479466	0.86[ASN][1000 genomes]
rs17523236	0.87[ASN][1000 genomes]
rs17595441	0.87[ASN][1000 genomes]
rs1904367	0.88[ASN][1000 genomes]
rs1947821	0.87[ASN][1000 genomes]
rs28436720	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28681437	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs28729501	0.88[ASN][1000 genomes]
rs4876426	0.88[ASN][1000 genomes]
rs56801366	0.88[ASN][1000 genomes]
rs57247033	0.88[ASN][1000 genomes]
rs6982867	0.86[ASN][1000 genomes]
rs7830322	0.84[ASN][1000 genomes]
rs7837084	0.85[ASN][1000 genomes]
rs7840826	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027070	chr8:112490160-112844323	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015355	chr8:112558586-113154605	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv539722	chr8:112558586-113154605	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv521997	chr8:112576678-112735588	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv971603	chr8:112725991-112728247	Weak transcription	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs41352048	SYBU	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:112722600-112730600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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