Variant report

Variant	rs41352245
Chromosome Location	chr17:53547655-53547656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10199060	0.84[EUR][1000 genomes]
rs10203118	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10203140	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10209646	0.84[EUR][1000 genomes]
rs10209718	0.84[EUR][1000 genomes]
rs10209934	0.84[EUR][1000 genomes]
rs11125399	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11125400	0.85[AMR][1000 genomes]
rs11891520	0.81[AFR][1000 genomes]
rs13403877	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2355189	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2355190	0.85[AMR][1000 genomes]
rs2355191	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2355192	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4246581	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4971583	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4971584	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4971585	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4971783	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6545252	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6545253	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6704885	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6713359	0.82[EUR][1000 genomes]
rs6717936	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6719671	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6720358	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6720680	0.83[EUR][1000 genomes]
rs6732545	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7582556	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7595947	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2100	chr17:53492380-54328516	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1062337	chr17:53510996-54161442	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	esv16382	chr17:53545954-53553610	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:53544400-53550000	Weak transcription	Placenta	Placenta
2	chr17:53544600-53551800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr17:53546600-53549800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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