Variant report

Variant	rs41372645
Chromosome Location	chr3:46283474-46283475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs3918379	1.00[AMR][1000 genomes]
rs3918384	1.00[AMR][1000 genomes]
rs3918385	1.00[AMR][1000 genomes]
rs41391847	1.00[AMR][1000 genomes]
rs41411547	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41445746	1.00[AMR][1000 genomes]
rs41482046	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41498544	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46278400-46283600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:46281600-46285600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:46281600-46288600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:46281800-46284400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:46282000-46283600	Weak transcription	Fetal Thymus	thymus
6	chr3:46282200-46283800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr3:46282600-46283800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr3:46282800-46283600	Weak transcription	Primary T cells from cord blood	blood
9	chr3:46282800-46284400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr3:46282800-46284400	Enhancers	Primary B cells from peripheral blood	blood
11	chr3:46283000-46283800	Enhancers	Primary B cells from cord blood	blood
12	chr3:46283200-46284600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:46283400-46284200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:46283400-46284400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
15	chr3:46283400-46284600	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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