Variant report

Variant	rs413801
Chromosome Location	chr3:99998512-99998513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11719143	1.00[CHD][hapmap]
rs2304806	1.00[CEU][hapmap]
rs9833995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1003924	chr3:99933762-100112690	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv869690	chr3:99984442-100054949	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99980600-100037200	Weak transcription	Spleen	Spleen
2	chr3:99980600-100053200	Weak transcription	Gastric	stomach
3	chr3:99981200-99998600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr3:99981200-99998600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:99981200-100004800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:99981200-100030800	Weak transcription	Fetal Heart	heart
7	chr3:99981400-100004400	Weak transcription	Lung	lung
8	chr3:99982400-100005400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:99982600-99998800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:99982800-100001400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:99983200-99999600	Weak transcription	Fetal Intestine Large	intestine
12	chr3:99983200-100010000	Weak transcription	Pancreas	Pancrea
13	chr3:99983400-99999400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr3:99984200-99998800	Weak transcription	Fetal Intestine Small	intestine
15	chr3:99984200-99999000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr3:99984200-99999400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:99984200-100010000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:99984200-100011000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:99986600-100024800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr3:99988200-99999200	Weak transcription	Liver	Liver
21	chr3:99988800-100013800	Weak transcription	Fetal Brain Male	brain
22	chr3:99989000-99998600	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:99989000-99999400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr3:99989000-100002000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr3:99989000-100005800	Weak transcription	Thymus	Thymus
26	chr3:99989000-100007600	Weak transcription	HUVEC	blood vessel
27	chr3:99989000-100025000	Weak transcription	Fetal Brain Female	brain
28	chr3:99989200-99998800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr3:99989200-99999400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr3:99989200-100000400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr3:99989400-99998800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr3:99989400-100000400	Weak transcription	Adipose Nuclei	Adipose
33	chr3:99990400-99998600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:99990400-99998800	Weak transcription	Fetal Stomach	stomach
35	chr3:99990400-99999000	Weak transcription	NH-A	brain
36	chr3:99990400-100005000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr3:99990400-100006000	Weak transcription	HSMMtube	muscle
38	chr3:99990600-99998800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr3:99990600-99999000	Weak transcription	NHLF	lung
40	chr3:99990600-100010600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr3:99990600-100030600	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr3:99990800-100001600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:99990800-100021400	Weak transcription	Psoas Muscle	Psoas
44	chr3:99991000-99999200	Weak transcription	NHEK	skin
45	chr3:99991000-100000600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr3:99991000-100001600	Weak transcription	HMEC	breast
47	chr3:99991000-100006000	Weak transcription	Right Ventricle	heart
48	chr3:99991400-100000400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr3:99992400-100017600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr3:99992600-99999200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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