Variant report

Variant	rs413840
Chromosome Location	chr7:107783612-107783613
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107783148..107785666-chr7:107787857..107790630,2	MCF-7	breast:
2	chr7:107532265..107534572-chr7:107782762..107784337,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs377348	0.92[EUR][1000 genomes]
rs377926	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs414077	0.84[EUR][1000 genomes]
rs435533	0.88[EUR][1000 genomes]
rs449077	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs449506	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107774800-107786000	Weak transcription	NHEK	skin
2	chr7:107775800-107789000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:107779400-107784600	Weak transcription	Fetal Stomach	stomach
4	chr7:107779800-107789200	Weak transcription	HUVEC	blood vessel
5	chr7:107780000-107786400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:107780200-107786400	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:107781000-107786600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:107781200-107785600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:107781400-107786000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:107781600-107786400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:107782400-107784800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:107782600-107786000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:107782800-107786400	Weak transcription	Brain Angular Gyrus	brain
14	chr7:107783000-107792600	Weak transcription	Pancreas	Pancrea
15	chr7:107783200-107784000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:107783200-107784200	Enhancers	Fetal Intestine Small	intestine
17	chr7:107783400-107783800	Enhancers	HepG2	liver
18	chr7:107783400-107786400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr7:107783600-107784200	Enhancers	Fetal Intestine Large	intestine
20	chr7:107783600-107784600	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr7:107783600-107784800	Enhancers	K562	blood

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