Variant report

Variant	rs4140499
Chromosome Location	chr6:163774147-163774148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163772638..163774453-chr6:163775997..163777514,2	K562	blood:
2	chr6:163769098..163771002-chr6:163773045..163775280,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11754678	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12524470	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16894832	0.82[ASN][1000 genomes]
rs58095747	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs735752	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7750721	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163767600-163776200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:163767600-163776600	Enhancers	Brain Cingulate Gyrus	brain
3	chr6:163768200-163775600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:163768200-163776400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:163768200-163776400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:163768400-163775800	Weak transcription	Right Atrium	heart
7	chr6:163768600-163775200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:163768600-163775200	Weak transcription	Right Ventricle	heart
9	chr6:163768600-163775800	Weak transcription	Esophagus	oesophagus
10	chr6:163769000-163775000	Weak transcription	Hela-S3	cervix
11	chr6:163769000-163776000	Weak transcription	Psoas Muscle	Psoas
12	chr6:163770400-163775200	Weak transcription	HSMMtube	muscle
13	chr6:163770400-163775600	Weak transcription	HSMM	muscle
14	chr6:163770600-163775800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:163770600-163775800	Weak transcription	Left Ventricle	heart
16	chr6:163770800-163775000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:163770800-163775000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:163770800-163775200	Weak transcription	NH-A	brain
19	chr6:163770800-163775200	Weak transcription	NHDF-Ad	bronchial
20	chr6:163771000-163775200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:163771200-163776000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr6:163771600-163775000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:163772200-163778000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:163772200-163778600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr6:163772400-163778800	Enhancers	Placenta	Placenta
26	chr6:163772600-163775000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:163772600-163775000	Weak transcription	Fetal Heart	heart
28	chr6:163772600-163775800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr6:163773200-163774400	Flanking Active TSS	Brain Hippocampus Middle	brain
30	chr6:163773400-163774200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:163773400-163774400	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr6:163773400-163775200	Weak transcription	Fetal Lung	lung
33	chr6:163773400-163776800	Enhancers	Brain Angular Gyrus	brain
34	chr6:163773400-163777600	Enhancers	Fetal Muscle Leg	muscle
35	chr6:163773600-163774200	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr6:163773600-163774400	Flanking Active TSS	Brain Substantia Nigra	brain
37	chr6:163773600-163775200	Enhancers	Adipose Nuclei	Adipose
38	chr6:163773600-163775800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:163773600-163778000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr6:163773800-163774200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:163773800-163775800	Enhancers	HUVEC	blood vessel
42	chr6:163773800-163776200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:163774000-163774200	Enhancers	Lung	lung
44	chr6:163774000-163774400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:163774000-163774400	Enhancers	Spleen	Spleen
46	chr6:163774000-163775200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:163774000-163775200	Enhancers	Fetal Muscle Trunk	muscle
48	chr6:163774000-163775400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:163774000-163776000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:163774000-163776000	Enhancers	Brain Inferior Temporal Lobe	brain

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