Variant report

Variant	rs41405149
Chromosome Location	chr9:14299989-14299990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:14297320..14301471-chr9:14302708..14305630,4	MCF-7	breast:
2	chr9:14299826..14301898-chr9:14314358..14316804,2	K562	blood:
3	chr9:14292168..14294648-chr9:14297508..14300347,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147862	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs521145	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831516	chr9:14280695-14437445	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14271200-14306800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:14283800-14301600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:14284200-14301800	Weak transcription	Osteobl	bone
4	chr9:14287000-14300200	Weak transcription	Right Ventricle	heart
5	chr9:14292600-14300000	Weak transcription	NHLF	lung
6	chr9:14295000-14300000	Weak transcription	Fetal Intestine Large	intestine
7	chr9:14295600-14302600	Weak transcription	Lung	lung
8	chr9:14296200-14303000	Enhancers	Colon Smooth Muscle	Colon
9	chr9:14296400-14303000	Enhancers	Fetal Heart	heart
10	chr9:14296600-14300000	Enhancers	Brain Anterior Caudate	brain
11	chr9:14297000-14306600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:14297200-14300600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr9:14297200-14303200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr9:14297200-14303400	Weak transcription	Hela-S3	cervix
15	chr9:14297400-14300000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:14297400-14300600	Weak transcription	Stomach Mucosa	stomach
17	chr9:14297400-14301800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:14297400-14306600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr9:14297400-14306600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:14297600-14300000	Weak transcription	HSMMtube	muscle
21	chr9:14297600-14309200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr9:14298400-14300000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:14298400-14300000	Enhancers	Brain Cingulate Gyrus	brain
24	chr9:14298600-14301600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr9:14298600-14303000	Enhancers	Brain Substantia Nigra	brain
26	chr9:14298800-14300000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:14298800-14300000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr9:14298800-14300200	Weak transcription	Psoas Muscle	Psoas
29	chr9:14298800-14304600	Genic enhancers	HUVEC	blood vessel
30	chr9:14298800-14311200	Weak transcription	Placenta	Placenta
31	chr9:14299000-14300000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:14299000-14300000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr9:14299000-14300000	Enhancers	Fetal Brain Male	brain
34	chr9:14299000-14300000	Weak transcription	Ovary	ovary
35	chr9:14299000-14300000	Weak transcription	Right Atrium	heart
36	chr9:14299000-14300200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr9:14299000-14300200	Enhancers	Adipose Nuclei	Adipose
38	chr9:14299000-14300200	Weak transcription	Fetal Muscle Leg	muscle
39	chr9:14299000-14300200	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr9:14299000-14300200	Weak transcription	HepG2	liver
41	chr9:14299000-14301000	Weak transcription	Left Ventricle	heart
42	chr9:14299000-14301000	Weak transcription	Pancreas	Pancrea
43	chr9:14299000-14301200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr9:14299000-14301200	Weak transcription	Small Intestine	intestine
45	chr9:14299000-14301200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr9:14299000-14301600	Weak transcription	Brain Angular Gyrus	brain
47	chr9:14299000-14301600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr9:14299000-14302600	Weak transcription	Colonic Mucosa	Colon
49	chr9:14299000-14302600	Weak transcription	Gastric	stomach
50	chr9:14299000-14303200	Weak transcription	Esophagus	oesophagus

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