Variant report

Variant	rs41408845
Chromosome Location	chr16:31271348-31271349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:31117662..31120413-chr16:31270812..31272683,2	MCF-7	breast:
2	chr16:31270699..31273371-chr16:31276561..31278848,2	K562	blood:

Variant related genes	Relation type
ENSG00000252876	Chromatin interaction
ENSG00000103507	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2230425	1.00[AMR][1000 genomes]
rs41476945	1.00[AMR][1000 genomes]
rs41507448	1.00[AMR][1000 genomes]
rs41508646	1.00[AMR][1000 genomes]
rs41514252	1.00[AMR][1000 genomes]
rs72550859	1.00[AMR][1000 genomes]
rs72550884	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
2	nsv1066073	chr16:31219071-31278572	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31262800-31271800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr16:31265200-31271400	Weak transcription	Right Atrium	heart
3	chr16:31265200-31271600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr16:31265200-31276600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr16:31265800-31276400	Weak transcription	A549	lung
6	chr16:31269800-31277800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr16:31270000-31271400	Enhancers	Primary hematopoietic stem cells	blood
8	chr16:31270000-31271600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr16:31270200-31271600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr16:31270400-31271400	Enhancers	Fetal Thymus	thymus
11	chr16:31270400-31273800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr16:31270400-31275000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr16:31270800-31272000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr16:31270800-31272200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr16:31270800-31272200	Enhancers	Spleen	Spleen
16	chr16:31271000-31271400	Enhancers	Primary T cells from cord blood	blood
17	chr16:31271000-31271400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr16:31271000-31271800	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr16:31271000-31272200	Flanking Active TSS	GM12878-XiMat	blood
20	chr16:31271000-31272600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
21	chr16:31271000-31272600	Enhancers	K562	blood
22	chr16:31271000-31273200	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr16:31271200-31271600	Enhancers	Primary B cells from peripheral blood	blood
24	chr16:31271200-31271800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
25	chr16:31271200-31272000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
26	chr16:31271200-31272000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr16:31271200-31272200	Active TSS	Primary monocytes fromperipheralblood	blood
28	chr16:31271200-31276400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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