Variant report

Variant	rs4141468
Chromosome Location	chr1:75994531-75994532
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10157357	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10465736	1.00[JPT][hapmap]
rs10465738	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10465739	0.87[ASN][1000 genomes]
rs10518500	1.00[JPT][hapmap]
rs106252	0.87[ASN][1000 genomes]
rs11163500	1.00[JPT][hapmap]
rs11806459	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12057382	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12057688	1.00[JPT][hapmap]
rs12088462	0.94[ASN][1000 genomes]
rs13373792	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13373826	1.00[JPT][hapmap]
rs1412715	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1778451	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1999493	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs211784	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs211785	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs211787	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4598448	1.00[JPT][hapmap]
rs58831329	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv3445096	chr1:75933216-76126980	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2757737	chr1:75986904-76187748	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758943	chr1:75986904-76187748	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75988400-75998400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:75993400-75994800	Enhancers	Fetal Brain Female	brain
3	chr1:75993400-75995200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:75994400-75994800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr1:75994400-75995200	Enhancers	Fetal Brain Male	brain
6	chr1:75994400-75996000	Enhancers	HUVEC	blood vessel
7	chr1:75994400-75996200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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