Variant report

Variant	rs4141474
Chromosome Location	chr12:20951540-20951541
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:20639028..20639571-chr12:20951385..20952022,2	MCF-7	breast:
2	chr12:20798864..20799798-chr12:20951213..20952118,4	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1002441	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10444412	0.84[EUR][1000 genomes]
rs10841611	0.81[EUR][1000 genomes]
rs10841612	0.81[EUR][1000 genomes]
rs10841613	0.84[EUR][1000 genomes]
rs10841615	0.86[EUR][1000 genomes]
rs10841616	0.86[EUR][1000 genomes]
rs11045439	0.84[EUR][1000 genomes]
rs11045440	0.84[EUR][1000 genomes]
rs11045441	0.83[EUR][1000 genomes]
rs11045446	0.86[EUR][1000 genomes]
rs11045447	0.86[EUR][1000 genomes]
rs11045448	0.86[EUR][1000 genomes]
rs11045497	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11045501	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11045503	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11494694	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11519054	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12810927	0.80[EUR][1000 genomes]
rs12818167	0.85[EUR][1000 genomes]
rs12818525	0.87[EUR][1000 genomes]
rs12821686	0.86[EUR][1000 genomes]
rs1399932	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1829009	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2099368	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs35508637	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs35962288	0.85[EUR][1000 genomes]
rs4762670	0.84[EUR][1000 genomes]
rs4762773	0.84[EUR][1000 genomes]
rs4762774	0.84[EUR][1000 genomes]
rs4762777	0.85[EUR][1000 genomes]
rs4762784	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs61921585	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6487138	0.84[EUR][1000 genomes]
rs7295297	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7967660	0.86[EUR][1000 genomes]
rs7980844	0.83[EUR][1000 genomes]
rs953001	0.84[EUR][1000 genomes]
rs953002	0.84[EUR][1000 genomes]
rs957164	0.86[EUR][1000 genomes]
rs9669084	0.81[EUR][1000 genomes]
rs972506	0.81[EUR][1000 genomes]
rs972507	0.81[EUR][1000 genomes]
rs974039	0.85[EUR][1000 genomes]
rs974040	0.83[EUR][1000 genomes]
rs974041	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043890	chr12:20659151-21309993	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv541410	chr12:20659151-21309993	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1054997	chr12:20682009-21292602	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv17347	chr12:20892854-21029179	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1051454	chr12:20893994-20999635	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1040033	chr12:20914439-21078855	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv869995	chr12:20929531-21081863	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv2758297	chr12:20942215-21117820	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2759882	chr12:20942215-21117820	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv427905	chr12:20942215-21117820	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv428275	chr12:20942215-21117820	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv898859	chr12:20950737-21082276	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:20942600-20961200	Weak transcription	A549	lung
2	chr12:20951200-20951600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr12:20951200-20951600	Enhancers	Liver	Liver
4	chr12:20951200-20952000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:20951200-20953000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:20951400-20951600	Enhancers	Adipose Nuclei	Adipose

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