Variant report

Variant	rs4142208
Chromosome Location	chr6:134207050-134207051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs151105	0.81[ASN][1000 genomes]
rs151107	0.81[ASN][1000 genomes]
rs151108	0.81[ASN][1000 genomes]
rs151109	0.81[ASN][1000 genomes]
rs228853	0.81[ASN][1000 genomes]
rs229919	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134206400-134207200	Enhancers	Fetal Lung	lung
2	chr6:134206800-134207600	Enhancers	Fetal Stomach	stomach
3	chr6:134207000-134207400	Enhancers	Fetal Kidney	kidney
4	chr6:134207000-134207600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:134207000-134208400	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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