Variant report

Variant	rs4142664
Chromosome Location	chr1:55935941-55935942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12121686	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008241	chr1:55922008-55972596	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55932600-55938000	Weak transcription	HMEC	breast
2	chr1:55932800-55940000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:55934600-55937600	Weak transcription	K562	blood
4	chr1:55934600-55941400	Weak transcription	Fetal Lung	lung
5	chr1:55934800-55940200	Weak transcription	NHLF	lung
6	chr1:55935000-55939800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:55935200-55938000	Weak transcription	NHDF-Ad	bronchial
8	chr1:55935200-55938400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:55935200-55938400	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:55935600-55938600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:55935800-55937200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:55935800-55938000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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