Variant report

Variant	rs4143179
Chromosome Location	chr6:145164253-145164254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11155382	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1128289	0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs11751019	0.81[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11752756	0.81[ASN][1000 genomes]
rs11753191	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12524896	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12663058	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1544157	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17074336	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4143177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895658	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57155787	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73007457	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv886741	chr6:145123326-145165362	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145099600-145165800	Weak transcription	Small Intestine	intestine
2	chr6:145116400-145169000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:145117400-145175200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr6:145126600-145169400	Weak transcription	Stomach Mucosa	stomach
5	chr6:145130800-145172200	Weak transcription	NH-A	brain
6	chr6:145135400-145166000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:145137400-145176800	Weak transcription	Fetal Heart	heart
8	chr6:145137800-145175800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr6:145141400-145172000	Weak transcription	Brain Substantia Nigra	brain
10	chr6:145141400-145175200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:145142000-145171400	Weak transcription	HMEC	breast
12	chr6:145143000-145173600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr6:145145400-145167400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:145146400-145167400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:145150800-145167800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:145154200-145164400	Strong transcription	Liver	Liver
17	chr6:145154200-145175200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:145154400-145165200	Strong transcription	Adipose Nuclei	Adipose
19	chr6:145154400-145173400	Strong transcription	Primary B cells from peripheral blood	blood
20	chr6:145154400-145175000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:145154400-145175200	Strong transcription	Dnd41	blood
22	chr6:145154800-145164600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:145154800-145165800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:145154800-145166000	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr6:145154800-145169200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:145154800-145175200	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr6:145155400-145164400	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr6:145155400-145166000	Strong transcription	Left Ventricle	heart
29	chr6:145155800-145171800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:145156400-145165800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:145156600-145168600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:145156800-145165400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:145157200-145164800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:145157400-145173400	Weak transcription	Fetal Brain Male	brain
35	chr6:145157800-145165800	Weak transcription	NHLF	lung
36	chr6:145157800-145167400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:145157800-145169200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:145157800-145176400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:145158400-145167600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:145158600-145176800	Weak transcription	Esophagus	oesophagus
41	chr6:145158800-145173600	Weak transcription	Psoas Muscle	Psoas
42	chr6:145158800-145174800	Weak transcription	Placenta	Placenta
43	chr6:145159200-145173800	Weak transcription	GM12878-XiMat	blood
44	chr6:145159200-145176600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:145159400-145168600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr6:145159400-145168800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:145159400-145171600	Weak transcription	Fetal Kidney	kidney
48	chr6:145159400-145177400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:145159600-145175200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr6:145160600-145167000	Weak transcription	Gastric	stomach

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