Variant report

Variant	rs4143736
Chromosome Location	chr9:73517105-73517106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13287493	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13289287	0.82[EUR][1000 genomes]
rs1361028	0.83[EUR][1000 genomes]
rs17055996	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7037609	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72729784	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1043383	chr9:73517062-73556679	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73508600-73519800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:73515600-73517600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:73515600-73517800	Enhancers	NHDF-Ad	bronchial
4	chr9:73515800-73517600	Enhancers	HUVEC	blood vessel
5	chr9:73515800-73517800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:73516000-73517800	Enhancers	HSMM	muscle
7	chr9:73516000-73517800	Enhancers	NH-A	brain
8	chr9:73516000-73518000	Enhancers	Fetal Kidney	kidney
9	chr9:73516000-73518200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:73516000-73518200	Enhancers	NHLF	lung
11	chr9:73516000-73518400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:73516000-73518400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:73516200-73517200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr9:73516600-73517600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr9:73516600-73517800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:73516600-73518000	Enhancers	Stomach Mucosa	stomach
17	chr9:73516800-73517200	Flanking Active TSS	NHEK	skin
18	chr9:73516800-73517400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:73516800-73517400	Enhancers	Fetal Heart	heart
20	chr9:73516800-73517800	Enhancers	Osteobl	bone
21	chr9:73516800-73518000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr9:73516800-73518400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:73516800-73518400	Flanking Active TSS	HMEC	breast
24	chr9:73516800-73518600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:73517000-73517200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr9:73517000-73517400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr9:73517000-73517400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:73517000-73517400	Enhancers	Duodenum Mucosa	Duodenum
29	chr9:73517000-73517600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:73517000-73517600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:73517000-73517600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr9:73517000-73517800	Enhancers	Placenta Amnion	Placenta Amnion
33	chr9:73517000-73518000	Enhancers	H9 Cell Line	embryonic stem cell
34	chr9:73517000-73518200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:73517000-73518400	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr9:73517000-73518400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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