Variant report

Variant	rs41439746
Chromosome Location	chr1:94995936-94995937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1098617	1.00[AMR][1000 genomes]
rs1623135	1.00[AMR][1000 genomes]
rs58608220	1.00[AFR][1000 genomes]
rs6687228	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871764	chr1:94917402-95004084	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv531881	chr1:94937444-95053785	Weak transcription Bivalent Enhancer Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94917800-95000800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:94923800-95000400	Weak transcription	Aorta	Aorta
3	chr1:94942400-94997200	Weak transcription	Right Ventricle	heart
4	chr1:94956200-95004000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:94958600-95004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:94965600-95000400	Weak transcription	Small Intestine	intestine
7	chr1:94965600-95006400	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:94969200-94996200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr1:94969200-95000400	Weak transcription	Colonic Mucosa	Colon
10	chr1:94970400-94996000	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:94970400-95003800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr1:94971000-94996600	Weak transcription	Fetal Stomach	stomach
13	chr1:94971000-94999800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr1:94972200-95004400	Weak transcription	A549	lung
15	chr1:94979200-95005000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr1:94983400-94996800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr1:94985200-95001200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr1:94986000-95006200	Weak transcription	Liver	Liver
19	chr1:94988800-95000000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr1:94991600-95004000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr1:94992200-94996000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:94992200-94997200	Weak transcription	HepG2	liver
23	chr1:94992800-94996000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:94993000-94998000	Weak transcription	Osteobl	bone
25	chr1:94993200-94997000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr1:94993400-94996000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr1:94993400-95001000	Weak transcription	Brain Anterior Caudate	brain
28	chr1:94993600-94996000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr1:94993600-94996400	Weak transcription	Lung	lung
30	chr1:94993600-94997200	Weak transcription	Gastric	stomach
31	chr1:94993600-95001800	Weak transcription	Brain Hippocampus Middle	brain
32	chr1:94993600-95002400	Weak transcription	Stomach Mucosa	stomach
33	chr1:94993600-95002800	Weak transcription	Fetal Brain Male	brain
34	chr1:94993600-95004800	Weak transcription	HSMMtube	muscle
35	chr1:94993800-94996000	Weak transcription	NHDF-Ad	bronchial
36	chr1:94994000-94996000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr1:94994000-94996400	Weak transcription	Fetal Brain Female	brain
38	chr1:94994000-94997600	Weak transcription	Fetal Kidney	kidney
39	chr1:94994000-94998600	Strong transcription	NHLF	lung
40	chr1:94994000-95000400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr1:94994000-95001200	Strong transcription	NH-A	brain
42	chr1:94994000-95002200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr1:94994000-95003600	Weak transcription	Brain Germinal Matrix	brain
44	chr1:94994000-95003800	Weak transcription	Brain Substantia Nigra	brain
45	chr1:94994200-94997800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr1:94994200-94998600	Strong transcription	Fetal Intestine Small	intestine
47	chr1:94994200-95002000	Strong transcription	Fetal Intestine Large	intestine
48	chr1:94994200-95002800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr1:94994400-94996000	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr1:94994400-94996200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links