Variant report

Variant	rs41439750
Chromosome Location	chr6:56388799-56388800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:56386785..56388815-chr6:56390586..56392837,2	MCF-7	breast:
2	chr6:56383107..56384935-chr6:56387446..56390248,2	K562	blood:
3	chr6:56379723..56396922-chr6:56400495..56411638,31	K562	blood:
4	chr6:56319049..56321408-chr6:56387396..56389873,2	K562	blood:

Variant related genes	Relation type
ENSG00000151914	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7775134	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv885912	chr6:56327849-56458836	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1016868	chr6:56376165-56417631	Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56341800-56407400	Weak transcription	Spleen	Spleen
2	chr6:56362400-56391200	Weak transcription	Esophagus	oesophagus
3	chr6:56362800-56400200	Weak transcription	Colonic Mucosa	Colon
4	chr6:56363000-56402200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:56373000-56390800	Weak transcription	Placenta	Placenta
6	chr6:56374200-56390800	Weak transcription	Lung	lung
7	chr6:56374200-56391000	Weak transcription	Right Atrium	heart
8	chr6:56374400-56392000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:56374400-56396800	Weak transcription	Fetal Brain Female	brain
10	chr6:56374600-56390800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:56374600-56391200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:56374600-56395200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:56374600-56399600	Weak transcription	Fetal Thymus	thymus
14	chr6:56376400-56407200	Weak transcription	Gastric	stomach
15	chr6:56376600-56389800	Weak transcription	A549	lung
16	chr6:56377200-56404200	Weak transcription	K562	blood
17	chr6:56380400-56390400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:56380600-56390400	Weak transcription	Stomach Mucosa	stomach
19	chr6:56380600-56401200	Weak transcription	Psoas Muscle	Psoas
20	chr6:56382000-56390400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:56382600-56390800	Weak transcription	Aorta	Aorta
22	chr6:56382600-56391000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr6:56382800-56390800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:56383200-56396400	Weak transcription	Brain Germinal Matrix	brain
25	chr6:56383200-56402400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:56384000-56390800	Weak transcription	Right Ventricle	heart
27	chr6:56384400-56389000	Weak transcription	Osteobl	bone
28	chr6:56384400-56402200	Weak transcription	Small Intestine	intestine
29	chr6:56384600-56389200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr6:56384600-56389800	Weak transcription	Fetal Brain Male	brain
31	chr6:56384600-56390200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:56384600-56390200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:56384600-56390400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr6:56384600-56390600	Weak transcription	HUVEC	blood vessel
35	chr6:56384600-56390800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:56384600-56390800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:56384600-56390800	Weak transcription	Pancreas	Pancrea
38	chr6:56384600-56391000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:56384800-56389000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:56385200-56389400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:56385200-56390800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr6:56385400-56389600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:56385400-56390200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:56385600-56388800	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr6:56385600-56391000	Enhancers	Rectal Smooth Muscle	rectum
46	chr6:56385800-56390200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:56386200-56388800	Weak transcription	HSMMtube	muscle
48	chr6:56386200-56389400	Enhancers	Colon Smooth Muscle	Colon
49	chr6:56386200-56391000	Enhancers	Pancreatic Islets	Pancreatic Islet
50	chr6:56386400-56388800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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