Variant report

Variant	rs41443948
Chromosome Location	chr3:150455687-150455688
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150454729..150455798-chr3:150465746..150466877,4	MCF-7	breast:
2	chr3:150319886..150321731-chr3:150453531..150455986,2	K562	blood:
3	chr3:150454685..150455867-chr3:150561994..150563025,47	MCF-7	breast:
4	chr3:150445895..150450049-chr3:150452463..150456405,5	MCF-7	breast:
5	chr3:150454885..150455745-chr3:150491577..150492178,2	MCF-7	breast:
6	chr3:149956188..149956754-chr3:150455102..150455773,3	MCF-7	breast:
7	chr3:150454735..150455867-chr3:150561994..150563025,23	MCF-7	breast:
8	chr3:150455185..150457456-chr3:150562982..150565721,2	MCF-7	breast:
9	chr3:150455149..150455742-chr3:150465878..150466660,2	MCF-7	breast:
10	chr3:150321066..150322629-chr3:150455055..150457074,2	MCF-7	breast:
11	chr3:150324339..150327073-chr3:150455031..150456559,2	K562	blood:
12	chr3:150455406..150455924-chr3:150479414..150480220,2	MCF-7	breast:
13	chr3:150454689..150455809-chr3:150561872..150563110,20	MCF-7	breast:
14	chr3:150440644..150442548-chr3:150452902..150455892,2	MCF-7	breast:
15	chr3:150454158..150457474-chr3:150459576..150462833,6	K562	blood:
16	chr3:150442966..150446319-chr3:150451835..150458890,10	K562	blood:
17	chr3:150440106..150441215-chr3:150454679..150455737,25	MCF-7	breast:
18	chr3:150440106..150441295-chr3:150454715..150455751,43	MCF-7	breast:
19	chr3:150452566..150460091-chr3:150475752..150483574,15	K562	blood:
20	chr3:150262901..150265286-chr3:150454601..150457225,2	MCF-7	breast:
21	chr3:150440150..150441205-chr3:150454722..150455819,27	MCF-7	breast:
22	chr3:150071588..150073829-chr3:150454934..150457730,2	MCF-7	breast:
23	chr3:150449791..150453661-chr3:150454357..150457851,6	K562	blood:
24	chr3:150454667..150455766-chr3:150473952..150475042,29	MCF-7	breast:
25	chr3:150450337..150459570-chr3:150476282..150483839,23	K562	blood:

No data

Variant related genes	Relation type
ENSG00000120742	Chromatin interaction
ENSG00000181788	Chromatin interaction
ENSG00000198843	Chromatin interaction
ENSG00000144895	Chromatin interaction
ENSG00000244541	Chromatin interaction
ENSG00000244265	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs41447648	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150429200-150457600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:150439800-150457600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:150439800-150459000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:150443200-150457800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:150444000-150457600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr3:150446000-150455800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:150446000-150458600	Weak transcription	Brain Substantia Nigra	brain
8	chr3:150446200-150458400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:150448000-150457600	Weak transcription	Aorta	Aorta
10	chr3:150449400-150458400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:150450200-150457400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:150451000-150457000	Enhancers	Fetal Heart	heart
13	chr3:150451000-150457600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:150451000-150457600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr3:150451200-150456800	Enhancers	Left Ventricle	heart
16	chr3:150451200-150458400	Enhancers	Placenta	Placenta
17	chr3:150451400-150455800	Weak transcription	HSMM	muscle
18	chr3:150451400-150456000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:150451400-150458800	Weak transcription	Fetal Muscle Leg	muscle
20	chr3:150451400-150459200	Weak transcription	HSMMtube	muscle
21	chr3:150451400-150461400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr3:150451600-150457800	Weak transcription	Fetal Stomach	stomach
23	chr3:150451800-150457000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:150451800-150457600	Weak transcription	Fetal Lung	lung
25	chr3:150451800-150459000	Weak transcription	Dnd41	blood
26	chr3:150451800-150462400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:150452200-150456000	Enhancers	K562	blood
28	chr3:150452600-150457000	Enhancers	NHEK	skin
29	chr3:150453400-150458400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr3:150453400-150458600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr3:150453400-150458600	Weak transcription	Brain Angular Gyrus	brain
32	chr3:150453400-150458600	Weak transcription	Brain Hippocampus Middle	brain
33	chr3:150453600-150457000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr3:150453600-150460000	Weak transcription	Lung	lung
35	chr3:150453800-150456800	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr3:150453800-150457000	Enhancers	Placenta Amnion	Placenta Amnion
37	chr3:150453800-150457800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:150453800-150478000	Weak transcription	Brain Germinal Matrix	brain
39	chr3:150454000-150456800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr3:150454200-150456400	Enhancers	Right Ventricle	heart
41	chr3:150454200-150456800	Enhancers	Adipose Nuclei	Adipose
42	chr3:150454200-150458200	Enhancers	Fetal Intestine Large	intestine
43	chr3:150454400-150456800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr3:150454600-150456000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr3:150454600-150456400	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr3:150454600-150456800	Enhancers	Ovary	ovary
47	chr3:150454600-150456800	Enhancers	Pancreas	Pancrea
48	chr3:150454600-150458000	Enhancers	Duodenum Mucosa	Duodenum
49	chr3:150454600-150459000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr3:150454600-150459000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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