Variant report

Variant	rs41457050
Chromosome Location	chr4:86955938-86955939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86951249..86952929-chr4:86954553..86956104,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17011339	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86985400	Weak transcription	Ovary	ovary
2	chr4:86936000-86975600	Weak transcription	Brain Germinal Matrix	brain
3	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:86938600-86957800	Weak transcription	Fetal Brain Female	brain
5	chr4:86944600-86963000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:86945400-86963200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:86948200-86966600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:86949200-86988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:86950600-86959200	Weak transcription	Fetal Brain Male	brain
10	chr4:86950600-86967000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:86952200-86956000	Weak transcription	Spleen	Spleen
12	chr4:86952600-86956400	Enhancers	Fetal Heart	heart
13	chr4:86953000-86956200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr4:86953200-86957000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:86953600-86956200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr4:86953800-86959600	Enhancers	HUVEC	blood vessel
17	chr4:86954600-86956000	Enhancers	HMEC	breast
18	chr4:86954600-86956000	Enhancers	NH-A	brain
19	chr4:86954600-86958400	Enhancers	Osteobl	bone
20	chr4:86954600-86959000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr4:86954600-86960400	Weak transcription	Pancreas	Pancrea
22	chr4:86954600-86960600	Weak transcription	Left Ventricle	heart
23	chr4:86954800-86956000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr4:86954800-86956800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:86954800-86957000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr4:86954800-86957800	Weak transcription	HSMMtube	muscle
27	chr4:86954800-86959000	Weak transcription	Fetal Lung	lung
28	chr4:86954800-86960400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr4:86955000-86956800	Weak transcription	NHLF	lung
30	chr4:86955000-86957000	Weak transcription	Primary T cells from cord blood	blood
31	chr4:86955000-86957200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:86955000-86958000	Weak transcription	Hela-S3	cervix
33	chr4:86955000-86958200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:86955000-86959200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr4:86955000-86960400	Weak transcription	Fetal Stomach	stomach
36	chr4:86955000-86964400	Weak transcription	Brain Anterior Caudate	brain
37	chr4:86955000-86966400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr4:86955000-86985000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr4:86955200-86956000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:86955200-86956000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:86955200-86956400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:86955200-86956800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:86955200-86956800	Weak transcription	NHEK	skin
44	chr4:86955200-86957000	Weak transcription	NHDF-Ad	bronchial
45	chr4:86955200-86957200	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr4:86955200-86957800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr4:86955200-86957800	Weak transcription	Fetal Kidney	kidney
48	chr4:86955200-86960200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr4:86955200-86962600	Weak transcription	Aorta	Aorta
50	chr4:86955200-86964400	Weak transcription	Brain Substantia Nigra	brain

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