Variant report

Variant	rs4146484
Chromosome Location	chr4:73680605-73680606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11723795	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11728884	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11730890	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11731713	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461524	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1593448	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1593451	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1599445	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1813161	0.82[EUR][1000 genomes]
rs1813162	0.82[EUR][1000 genomes]
rs1813163	0.82[EUR][1000 genomes]
rs2010756	0.85[EUR][1000 genomes]
rs2126206	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2194933	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4694141	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs59830186	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60589574	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6446885	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6446894	0.81[EUR][1000 genomes]
rs6810425	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6815004	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6825201	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6829946	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6832369	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6833453	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6845164	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6858763	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7377303	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7440448	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7665035	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7676987	0.82[EUR][1000 genomes]
rs7681727	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7688481	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7694027	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7700231	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949371	chr4:73678470-74094500	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4146484	NAAA	cis	parietal	SCAN
rs4146484	RCHY1	cis	cerebellum	SCAN
rs4146484	CNBP	trans	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:73680000-73680800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links