Variant report

Variant	rs4146541
Chromosome Location	chr1:71022862-71022863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11209635	0.94[ASN][1000 genomes]
rs11209636	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12037194	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12040541	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12046595	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41392446	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71012600-71059800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:71020600-71023800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:71021400-71023000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:71021400-71023000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:71021400-71023200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:71021600-71023000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:71021600-71023000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:71022600-71023000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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