Variant report

Variant	rs4147165
Chromosome Location	chr9:95728276-95728277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95726879..95729699-chr9:95735044..95738591,3	K562	blood:
2	chr9:95726594..95728723-chr9:95769310..95772276,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127084	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13285107	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95715400-95732200	Weak transcription	Fetal Brain Female	brain
2	chr9:95720000-95731400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:95725400-95728600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr9:95725600-95729200	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr9:95725600-95734000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr9:95725800-95728400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
7	chr9:95725800-95728800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
8	chr9:95725800-95729000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:95725800-95729200	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr9:95726000-95728400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:95726000-95728400	Flanking Active TSS	HepG2	liver
12	chr9:95726000-95728600	Active TSS	Rectal Smooth Muscle	rectum
13	chr9:95726000-95728800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:95726000-95728800	Active TSS	Rectal Mucosa Donor 31	rectum
15	chr9:95726200-95728400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr9:95726200-95728600	Active TSS	Primary T helper naive cells from peripheral blood	blood
17	chr9:95726200-95728800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:95726400-95728400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
19	chr9:95726400-95729000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr9:95726400-95729000	Active TSS	Esophagus	oesophagus
21	chr9:95726400-95730200	Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr9:95726600-95728400	Active TSS	Pancreas	Pancrea
23	chr9:95726600-95728400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
24	chr9:95726600-95728400	Active TSS	Spleen	Spleen
25	chr9:95726600-95728600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:95726600-95728600	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr9:95726600-95728600	Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr9:95726600-95728800	Active TSS	Gastric	stomach
29	chr9:95726600-95728800	Active TSS	Sigmoid Colon	Sigmoid Colon
30	chr9:95726600-95728800	Active TSS	Small Intestine	intestine
31	chr9:95726600-95729000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
32	chr9:95726600-95729000	Active TSS	Liver	Liver
33	chr9:95726600-95729000	Active TSS	Placenta	Placenta
34	chr9:95726600-95730600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr9:95726600-95731400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr9:95726800-95728400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
37	chr9:95726800-95728800	Flanking Active TSS	GM12878-XiMat	blood
38	chr9:95726800-95731200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr9:95726800-95731200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr9:95726800-95732200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:95727000-95728600	Genic enhancers	Brain Germinal Matrix	brain
42	chr9:95727000-95729800	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
43	chr9:95727000-95729800	Transcr. at gene 5' and 3'	Dnd41	blood
44	chr9:95727200-95728800	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr9:95727200-95729200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr9:95727400-95728400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr9:95727400-95728400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr9:95727400-95728400	Enhancers	HSMMtube	muscle
49	chr9:95727400-95728800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr9:95727400-95729000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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