The 2.0 version of rSNPBase

Variant report

Variant rs41483246
Chromosome Location chr17:34202774-34202775
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:34179000-34203800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr17:34185800-34206800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr17:34192200-34218000 Weak transcription Stomach Smooth Muscle stomach
4 chr17:34192400-34213200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr17:34194000-34205800 Weak transcription K562 blood
6 chr17:34198400-34205400 Weak transcription Pancreas Pancrea
7 chr17:34198800-34206800 Weak transcription Primary B cells from peripheral blood blood
8 chr17:34198800-34206800 Weak transcription Placenta Placenta
9 chr17:34199200-34207200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr17:34201400-34204000 Enhancers HepG2 liver
11 chr17:34202000-34203000 Flanking Active TSS GM12878-XiMat blood
12 chr17:34202200-34203000 Enhancers Primary hematopoietic stem cells blood
13 chr17:34202200-34203800 Enhancers Adipose Nuclei Adipose
14 chr17:34202200-34204000 Transcr. at gene 5' and 3' Primary T cells fromperipheralblood blood
15 chr17:34202400-34202800 Enhancers ES-I3 Cell Line embryonic stem cell
16 chr17:34202400-34202800 Enhancers Primary monocytes fromperipheralblood blood
17 chr17:34202400-34202800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr17:34202400-34202800 Flanking Active TSS HUVEC blood vessel
19 chr17:34202400-34202800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
20 chr17:34202400-34203200 Enhancers Primary T killer naive cells fromperipheralblood blood
21 chr17:34202400-34203400 Enhancers Primary hematopoietic stem cells short term culture blood
22 chr17:34202400-34203600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr17:34202400-34203600 Enhancers Fetal Adrenal Gland Adrenal Gland
24 chr17:34202400-34203600 Enhancers Thymus Thymus
25 chr17:34202400-34203800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr17:34202400-34203800 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
27 chr17:34202400-34203800 Enhancers Primary T helper cells PMA-I stimulated --
28 chr17:34202400-34203800 Enhancers Primary T helper cells fromperipheralblood blood
29 chr17:34202400-34203800 Enhancers Spleen Spleen
30 chr17:34202400-34204000 Enhancers Fetal Thymus thymus
31 chr17:34202400-34206000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
32 chr17:34202400-34206200 Transcr. at gene 5' and 3' Primary Natural Killer cells fromperipheralblood blood
33 chr17:34202600-34202800 Enhancers Primary mononuclear cells fromperipheralblood Blood
34 chr17:34202600-34203000 Active TSS Primary T killer memory cells from peripheral blood blood
35 chr17:34202600-34203200 Enhancers Skeletal Muscle Female skeletal muscle
36 chr17:34202600-34203600 Enhancers Primary T helper naive cells fromperipheralblood blood
37 chr17:34202600-34203800 Enhancers Primary T cells from cord blood blood
38 chr17:34202600-34204000 Enhancers Right Atrium heart
39 chr17:34202600-34207800 Active TSS Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015