Variant report

Variant	rs4148532
Chromosome Location	chr13:95731190-95731191
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:95730617-95731814	K562	blood:	n/a	n/a

Variant related genes	Relation type
ABCC4	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1080482	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12584534	0.90[CHB][hapmap]
rs12853981	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12861846	0.86[ASN][1000 genomes]
rs12867863	0.99[ASN][1000 genomes]
rs12868708	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs1351257	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1617785	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1630807	0.85[CHB][hapmap]
rs1678344	0.82[ASN][1000 genomes]
rs1678354	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1729759	0.85[CHB][hapmap]
rs17300696	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1750190	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1751059	0.81[CHB][hapmap]
rs2274401	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34857509	0.98[ASN][1000 genomes]
rs35207821	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3782942	0.87[ASN][1000 genomes]
rs3782943	0.87[ASN][1000 genomes]
rs3782944	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3782945	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3782946	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3782949	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4148527	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs4148530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4148534	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4148535	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66502335	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6650282	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs8001657	0.90[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs922522	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9556457	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9561774	0.81[EUR][1000 genomes]
rs9561775	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9561776	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs9561778	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv525194	chr13:95672950-95737192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv562767	chr13:95725866-95731190	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95669600-95744000	Weak transcription	Small Intestine	intestine
2	chr13:95676000-95740000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:95683200-95751800	Weak transcription	Fetal Lung	lung
4	chr13:95685200-95734600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr13:95686800-95744600	Weak transcription	Esophagus	oesophagus
6	chr13:95692800-95735800	Weak transcription	NHEK	skin
7	chr13:95702400-95735200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr13:95710400-95741200	Weak transcription	Right Ventricle	heart
9	chr13:95718000-95741800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr13:95719600-95739800	Weak transcription	Pancreas	Pancrea
11	chr13:95720000-95735400	Weak transcription	HUVEC	blood vessel
12	chr13:95720000-95736200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr13:95720600-95735000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr13:95720600-95736600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr13:95720800-95734200	Weak transcription	Thymus	Thymus
16	chr13:95723000-95742200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:95723200-95733000	Weak transcription	Aorta	Aorta
18	chr13:95723800-95733000	Weak transcription	Fetal Intestine Small	intestine
19	chr13:95723800-95733000	Weak transcription	Fetal Stomach	stomach
20	chr13:95723800-95760000	Weak transcription	Colon Smooth Muscle	Colon
21	chr13:95724000-95740000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr13:95724000-95751800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr13:95724000-95760600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr13:95724200-95732400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr13:95724200-95733000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr13:95724200-95734600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr13:95724200-95734800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr13:95724200-95740000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr13:95724200-95749600	Weak transcription	Fetal Intestine Large	intestine
30	chr13:95726400-95733800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:95726400-95739800	Weak transcription	NH-A	brain
32	chr13:95727000-95739800	Weak transcription	NHLF	lung
33	chr13:95727000-95752600	Weak transcription	HSMM	muscle
34	chr13:95727000-95791600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr13:95727000-95812000	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr13:95727200-95735000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr13:95727200-95740000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr13:95727400-95736000	Weak transcription	NHDF-Ad	bronchial
39	chr13:95727600-95732600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr13:95727600-95733600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr13:95727600-95761000	Weak transcription	K562	blood
42	chr13:95727800-95732600	Weak transcription	A549	lung
43	chr13:95727800-95733400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr13:95727800-95744200	Weak transcription	Spleen	Spleen
45	chr13:95727800-95767800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr13:95728000-95733000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr13:95728000-95733200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr13:95728400-95778800	Weak transcription	Ovary	ovary
49	chr13:95728600-95733400	Weak transcription	Lung	lung
50	chr13:95728600-95744200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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