Variant report

Variant	rs4150040
Chromosome Location	chr4:78077882-78077883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr4:78077565-78078768	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr4:78077590-78077959	HepG2	liver:	n/a	n/a
3	POLR2A	chr4:78077624-78077923	HepG2	liver:	n/a	n/a
4	CEBPB	chr4:78077615-78078095	A549	lung:	n/a	chr4:78077651-78077664 chr4:78077919-78077927
5	MYBL2	chr4:78077644-78078613	HepG2	liver:	n/a	n/a
6	POLR2A	chr4:78077565-78078622	HCT-116	colon:	n/a	n/a
7	POLR2A	chr4:78077543-78078637	HCT-116	colon:	n/a	n/a
8	POU2F2	chr4:78077586-78078928	GM12878	blood:	n/a	chr4:78078899-78078911
9	TAF1	chr4:78077585-78078042	H1-neurons	neurons:	n/a	n/a
10	FOXM1	chr4:78077639-78078631	GM12878	blood:	n/a	n/a
11	SP4	chr4:78077821-78078641	H1-hESC	embryonic stem cell:	n/a	chr4:78078109-78078120 chr4:78078332-78078348 chr4:78078334-78078350
12	E2F4	chr4:78077427-78078491	MCF10A-Er-Src	breast:	n/a	chr4:78078336-78078345
13	FOS	chr4:78077719-78078141	GM12878	blood:	n/a	chr4:78077920-78077929 chr4:78078009-78078018
14	FOXA1	chr4:78077854-78078499	HepG2	liver:	n/a	n/a
15	HDAC2	chr4:78077523-78079738	MCF-7	breast:	n/a	n/a
16	ETS1	chr4:78077752-78078534	GM12878	blood:	n/a	chr4:78078300-78078307 chr4:78078299-78078310
17	TBP	chr4:78077552-78078694	H1-hESC	embryonic stem cell:	n/a	n/a
18	NRF1	chr4:78077059-78078526	SK-N-SH	brain:	n/a	chr4:78078336-78078345
19	NRF1	chr4:78077660-78078058	K562	blood:	n/a	n/a
20	NRF1	chr4:78077554-78078177	Hela-S3	cervix:	n/a	n/a
21	ELK1	chr4:78077743-78078331	Hela-S3	cervix:	n/a	n/a
22	TBP	chr4:78077662-78078505	GM12878	blood:	n/a	n/a
23	ZNF263	chr4:78077791-78078379	HEK293-T-REx	kidney:	n/a	n/a
24	MAFK	chr4:78077770-78078124	K562	blood:	n/a	n/a
25	FOS	chr4:78077741-78078488	MCF10A-Er-Src	breast:	n/a	chr4:78077920-78077929 chr4:78078009-78078018
26	POLR2A	chr4:78077489-78079663	K562	blood:	n/a	n/a
27	USF1	chr4:78077793-78078632	SK-N-SH	brain:	n/a	chr4:78078329-78078338 chr4:78078328-78078337 chr4:78078328-78078337 chr4:78078327-78078336
28	GATA1	chr4:78077228-78078848	PBDE	blood:	n/a	n/a
29	USF2	chr4:78077835-78078502	HepG2	liver:	n/a	chr4:78078329-78078338 chr4:78078328-78078337 chr4:78078328-78078337 chr4:78078326-78078337 chr4:78078327-78078336
30	RAD21	chr4:78077665-78077940	Hela-S3	cervix:	n/a	n/a
31	RELA	chr4:78077471-78078591	GM19099	blood:	n/a	n/a
32	MAX	chr4:78077819-78078904	HUVEC	blood vessel:	n/a	chr4:78078327-78078338 chr4:78078328-78078337
33	CEBPB	chr4:78077540-78078360	Hela-S3	cervix:	n/a	chr4:78077651-78077664 chr4:78077919-78077927
34	POLR2A	chr4:78077529-78079836	ECC-1	luminal epithelium:	n/a	n/a
35	RFX5	chr4:78076437-78080872	SK-N-SH	brain:	n/a	chr4:78078008-78078017 chr4:78077919-78077928 chr4:78077871-78077886 chr4:78077875-78077884
36	CREB1	chr4:78077676-78078686	H1-hESC	embryonic stem cell:	n/a	n/a
37	TBP	chr4:78077761-78078494	HepG2	liver:	n/a	n/a
38	POLR2A	chr4:78077650-78077909	SK-N-SH	brain:	n/a	n/a
39	GTF2F1	chr4:78077657-78078580	H1-hESC	embryonic stem cell:	n/a	n/a
40	CHD2	chr4:78077605-78079816	GM12878	blood:	n/a	chr4:78079272-78079282 chr4:78079023-78079033 chr4:78078809-78078819
41	EP300	chr4:78077443-78079827	ECC-1	luminal epithelium:	n/a	chr4:78079396-78079405 chr4:78078789-78078805
42	POLR2A	chr4:78077702-78078009	MCF-7	breast:	n/a	n/a
43	POLR2A	chr4:78077575-78079768	GM12878	blood:	n/a	n/a
44	BHLHE40	chr4:78077695-78080007	GM12878	blood:	n/a	chr4:78078329-78078338 chr4:78078328-78078337 chr4:78078328-78078337 chr4:78078327-78078336
45	TAF1	chr4:78077538-78079699	ECC-1	luminal epithelium:	n/a	n/a
46	PAX5	chr4:78077478-78078395	GM12878	blood:	n/a	chr4:78078299-78078308 chr4:78077754-78077763 chr4:78077781-78077799 chr4:78077780-78077799 chr4:78077742-78077769
47	USF2	chr4:78077720-78078530	H1-hESC	embryonic stem cell:	n/a	chr4:78078329-78078338 chr4:78078328-78078337 chr4:78078328-78078337 chr4:78078326-78078337 chr4:78078327-78078336
48	TCF12	chr4:78077388-78078502	ECC-1	luminal epithelium:	n/a	n/a
49	POLR2A	chr4:78077627-78077928	K562	blood:	n/a	n/a
50	TBP	chr4:78077569-78078387	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:77993925..77999822-chr4:78072652..78081114,32	MCF-7	breast:
2	chr4:77976734..77978589-chr4:78077582..78079671,2	MCF-7	breast:
3	chr4:77995650..77999094-chr4:78076501..78080726,6	K562	blood:
4	chr4:77994107..77999899-chr4:78076204..78082875,32	MCF-7	breast:
5	chr4:78076120..78077897-chr4:78090608..78092538,2	K562	blood:
6	chr4:77994543..78000148-chr4:78076403..78082799,9	K562	blood:

Variant related genes	Relation type
CCNG2	TF binding region
ENSG00000118816	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6820366	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78074800-78078000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:78075600-78078000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:78075600-78078000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:78076600-78079400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr4:78076600-78080400	Active TSS	Fetal Brain Male	brain
6	chr4:78076800-78079800	Active TSS	Fetal Muscle Trunk	muscle
7	chr4:78076800-78080000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr4:78076800-78080200	Active TSS	H9 Cell Line	embryonic stem cell
9	chr4:78076800-78080200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:78076800-78080800	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr4:78077000-78079600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:78077000-78080000	Active TSS	H1 Cell Line	embryonic stem cell
13	chr4:78077000-78080000	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr4:78077000-78080000	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr4:78077200-78078000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:78077200-78078400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:78077200-78078600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:78077200-78078600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:78077200-78079600	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr4:78077200-78079600	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr4:78077200-78079600	Active TSS	Fetal Stomach	stomach
22	chr4:78077200-78079800	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr4:78077200-78079800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:78077200-78079800	Active TSS	Brain Angular Gyrus	brain
25	chr4:78077200-78079800	Active TSS	NHLF	lung
26	chr4:78077200-78080000	Active TSS	Ovary	ovary
27	chr4:78077200-78080000	Active TSS	Rectal Smooth Muscle	rectum
28	chr4:78077200-78080200	Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr4:78077200-78080200	Active TSS	Aorta	Aorta
30	chr4:78077200-78080400	Active TSS	Stomach Smooth Muscle	stomach
31	chr4:78077200-78080600	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr4:78077200-78080800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr4:78077400-78078000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr4:78077400-78078000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr4:78077400-78078600	Active TSS	Brain Germinal Matrix	brain
36	chr4:78077400-78078600	Active TSS	Fetal Lung	lung
37	chr4:78077400-78079400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr4:78077400-78079400	Active TSS	Placenta	Placenta
39	chr4:78077400-78079600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:78077400-78079600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:78077400-78079600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:78077400-78079600	Active TSS	Brain Cingulate Gyrus	brain
43	chr4:78077400-78079600	Active TSS	Brain Hippocampus Middle	brain
44	chr4:78077400-78079600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
45	chr4:78077400-78079600	Active TSS	A549	lung
46	chr4:78077400-78079600	Active TSS	K562	blood
47	chr4:78077400-78079800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr4:78077400-78080000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr4:78077400-78080000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr4:78077400-78080000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links