Variant report

Variant	rs4150074
Chromosome Location	chr4:78083125-78083126
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78078408..78080899-chr4:78082933..78084763,3	K562	blood:
2	chr4:78077999..78082390-chr4:78082423..78088631,8	K562	blood:

Variant related genes	Relation type
ENSG00000138764	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10491461	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs10518168	0.94[CEU][hapmap];0.81[GIH][hapmap];0.89[MEX][hapmap];0.90[EUR][1000 genomes]
rs13116796	0.94[CEU][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs13130398	1.00[ASW][hapmap];0.94[CEU][hapmap];0.81[GIH][hapmap];0.89[MEX][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs13144211	1.00[YRI][hapmap]
rs17581744	1.00[ASW][hapmap];0.88[CEU][hapmap];0.89[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs35601542	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs716025	0.94[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs71607400	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78079800-78083800	Weak transcription	Left Ventricle	heart
2	chr4:78079800-78086000	Weak transcription	Stomach Mucosa	stomach
3	chr4:78080000-78083600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:78080000-78083600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:78080000-78084400	Weak transcription	Ovary	ovary
6	chr4:78080000-78085000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:78080000-78085200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr4:78080000-78086800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:78080000-78087400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr4:78080000-78089800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr4:78080000-78092800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:78080000-78093400	Weak transcription	Right Ventricle	heart
13	chr4:78080200-78084200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr4:78080200-78085200	Weak transcription	K562	blood
15	chr4:78080200-78086200	Strong transcription	Fetal Stomach	stomach
16	chr4:78080200-78086800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr4:78080200-78089800	Weak transcription	Aorta	Aorta
18	chr4:78080200-78094400	Weak transcription	Psoas Muscle	Psoas
19	chr4:78080400-78085000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:78080400-78088000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:78080400-78088600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr4:78080400-78089000	Strong transcription	NHDF-Ad	bronchial
23	chr4:78080400-78090800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr4:78080400-78091400	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr4:78080400-78092400	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr4:78080600-78084000	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr4:78080600-78084200	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr4:78080600-78088200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr4:78080600-78089600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr4:78080600-78091800	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr4:78080600-78091800	Strong transcription	Osteobl	bone
32	chr4:78080800-78089400	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr4:78080800-78089800	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr4:78080800-78091000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr4:78080800-78091400	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr4:78080800-78092400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr4:78081000-78090600	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr4:78081200-78083800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr4:78081200-78084400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:78081200-78084400	Strong transcription	NH-A	brain
41	chr4:78081200-78085400	Strong transcription	NHEK	skin
42	chr4:78081200-78086200	Strong transcription	Brain Anterior Caudate	brain
43	chr4:78081200-78087200	Genic enhancers	Primary B cells from cord blood	blood
44	chr4:78081200-78089800	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr4:78081200-78092000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr4:78081200-78092200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:78081200-78092400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:78081200-78092400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr4:78081200-78092400	Strong transcription	Placenta	Placenta
50	chr4:78081200-78092400	Strong transcription	Monocytes-CD14+_RO01746	blood

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