Variant report

Variant	rs41501347
Chromosome Location	chr6:74226667-74226668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:74221323..74236726-chr6:74306065..74338770,101	K562	blood:
2	chr6:74225322..74227120-chr6:74304460..74305982,2	K562	blood:
3	chr6:74219718..74234750-chr6:74354945..74369231,56	K562	blood:
4	6:74062967-74076046..6:74225478-74226762	GM12878	blood:
5	chr6:74220976..74234980-chr6:74352572..74366941,62	K562	blood:
6	chr11:8835559..8836309-chr6:74226294..74227037,2	Hela-S3	cervix:
7	chr6:74212439..74215009-chr6:74224269..74226857,3	K562	blood:
8	chr6:74136453..74139092-chr6:74226309..74227871,2	K562	blood:
9	chr6:74225345..74228338-chr6:74268407..74270549,2	K562	blood:
10	chr6:74224731..74227421-chr6:74361806..74363965,4	MCF-7	breast:
11	chr19:42721030..42721534-chr6:74226064..74226809,2	HCT-116	colon:
12	chr6:74169658..74172596-chr6:74225769..74229058,3	MCF-7	breast:
13	6:74160392-74184826..6:74225478-74226762	GM12878	blood:
14	chr6:74222886..74227431-chr6:74328724..74331054,7	K562	blood:
15	chr6:74209113..74211687-chr6:74224027..74227100,3	MCF-7	breast:
16	6:74078047-74099067..6:74225478-74226762	H1-hESC	embryonic stem cell:	embryo
17	chr6:74225495..74228323-chr6:74275867..74278333,2	MCF-7	breast:
18	chr6:74171683..74173790-chr6:74225512..74227822,2	MCF-7	breast:
19	chr6:74225719..74228474-chr6:74264854..74267464,2	K562	blood:
20	chr6:74224257..74227085-chr6:74333037..74337394,5	K562	blood:
21	6:74099986-74112890..6:74225478-74226762	GM12878	blood:
22	chr6:74222064..74227666-chr6:74315829..74323019,13	MCF-7	breast:
23	chr6:74225295..74227678-chr6:74405377..74406988,2	MCF-7	breast:
24	chr6:74207658..74210612-chr6:74224071..74227518,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MB21D1-3	chr6:74225475-74227579	NONHSAT113566

No data

Variant related genes	Relation type
ENSG00000203907	Chromatin interaction
ENSG00000235174	Chromatin interaction
ENSG00000135297	Chromatin interaction
ENSG00000119899	Chromatin interaction
ENSG00000203909	Chromatin interaction
ENSG00000231332	Chromatin interaction
ENSG00000224221	Chromatin interaction
ENSG00000238464	Chromatin interaction
ENSG00000203908	Chromatin interaction
ENSG00000231652	Chromatin interaction
ENSG00000156535	Chromatin interaction
ENSG00000207023	Chromatin interaction
ENSG00000164430	Chromatin interaction
ENSG00000080007	Chromatin interaction
ENSG00000218459	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12111143	0.90[AFR][1000 genomes]
rs3173188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57226222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58856847	0.96[AFR][1000 genomes]
rs59408050	0.81[AFR][1000 genomes]
rs59950652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60463425	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6923919	0.90[AFR][1000 genomes]
rs73450653	1.00[AMR][1000 genomes]
rs73450685	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73450688	0.81[AFR][1000 genomes]
rs73450697	0.81[AFR][1000 genomes]
rs73452515	0.81[AFR][1000 genomes]
rs73452557	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73452572	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73452576	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759576	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv886158	chr6:74126084-74436825	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
3	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv1017716	chr6:74173173-74401162	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases
6	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
7	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
8	esv2763576	chr6:74197638-74277249	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	160 gene(s)	inside rSNPs	diseases
9	nsv5350	chr6:74221995-74267088	Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	159 gene(s)	inside rSNPs	diseases
10	nsv886159	chr6:74223153-74275405	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	159 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74172200-74229200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:74187600-74228400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:74214000-74228000	Weak transcription	Right Ventricle	heart
4	chr6:74224200-74228000	Strong transcription	Left Ventricle	heart
5	chr6:74224200-74228600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:74224200-74229000	Genic enhancers	Primary T cells fromperipheralblood	blood
7	chr6:74224200-74229000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:74224200-74229200	Genic enhancers	Primary B cells from peripheral blood	blood
9	chr6:74224400-74227000	Strong transcription	Placenta	Placenta
10	chr6:74224400-74228400	Genic enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:74224400-74228400	Strong transcription	Fetal Muscle Trunk	muscle
12	chr6:74224600-74226800	Genic enhancers	Brain Hippocampus Middle	brain
13	chr6:74224600-74226800	Genic enhancers	Fetal Intestine Small	intestine
14	chr6:74224600-74226800	Strong transcription	HSMM	muscle
15	chr6:74224600-74227200	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
16	chr6:74224600-74227200	Strong transcription	Lung	lung
17	chr6:74224600-74227200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
18	chr6:74224600-74227400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:74224600-74227800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr6:74224600-74228000	Genic enhancers	Colon Smooth Muscle	Colon
21	chr6:74224600-74228400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr6:74224600-74228400	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:74224600-74229000	Genic enhancers	Primary B cells from cord blood	blood
24	chr6:74224600-74229000	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr6:74224600-74230600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
26	chr6:74224800-74226800	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:74224800-74226800	Strong transcription	Fetal Stomach	stomach
28	chr6:74224800-74227200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr6:74224800-74228400	Genic enhancers	Stomach Smooth Muscle	stomach
30	chr6:74224800-74229000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr6:74224800-74230600	Transcr. at gene 5' and 3'	A549	lung
32	chr6:74225000-74226800	Strong transcription	H9 Cell Line	embryonic stem cell
33	chr6:74225000-74227000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
34	chr6:74225000-74227200	Genic enhancers	Brain Inferior Temporal Lobe	brain
35	chr6:74225000-74227200	Transcr. at gene 5' and 3'	NHLF	lung
36	chr6:74225000-74228200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:74225000-74228400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:74225000-74228400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr6:74225000-74228400	Genic enhancers	Brain Anterior Caudate	brain
40	chr6:74225000-74228400	Genic enhancers	Brain Substantia Nigra	brain
41	chr6:74225000-74228400	Strong transcription	Esophagus	oesophagus
42	chr6:74225000-74228400	Genic enhancers	Rectal Smooth Muscle	rectum
43	chr6:74225000-74229000	Genic enhancers	Rectal Mucosa Donor 31	rectum
44	chr6:74225000-74230000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:74225000-74230000	Transcr. at gene 5' and 3'	NH-A	brain
46	chr6:74225000-74231600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:74225200-74226800	Genic enhancers	Liver	Liver
48	chr6:74225200-74227200	Genic enhancers	Brain Angular Gyrus	brain
49	chr6:74225200-74227800	Weak transcription	Right Atrium	heart
50	chr6:74225200-74228400	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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