Variant report

Variant	rs41502
Chromosome Location	chr5:50156789-50156790
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10043477	0.81[EUR][1000 genomes]
rs10471956	0.84[EUR][1000 genomes]
rs10755235	0.84[EUR][1000 genomes]
rs10940472	0.85[EUR][1000 genomes]
rs10940497	0.85[EUR][1000 genomes]
rs11739828	0.84[EUR][1000 genomes]
rs11750241	0.85[EUR][1000 genomes]
rs11750771	0.85[EUR][1000 genomes]
rs12188262	0.85[EUR][1000 genomes]
rs12519006	0.91[EUR][1000 genomes]
rs12521579	0.91[EUR][1000 genomes]
rs13153982	0.84[EUR][1000 genomes]
rs13173734	0.85[EUR][1000 genomes]
rs13359044	0.91[EUR][1000 genomes]
rs1375127	0.84[EUR][1000 genomes]
rs152102	0.91[EUR][1000 genomes]
rs154133	0.91[EUR][1000 genomes]
rs154135	0.92[EUR][1000 genomes]
rs154137	0.91[EUR][1000 genomes]
rs154138	0.92[EUR][1000 genomes]
rs154141	0.91[EUR][1000 genomes]
rs157970	0.94[EUR][1000 genomes]
rs169497	0.88[EUR][1000 genomes]
rs171555	0.91[EUR][1000 genomes]
rs17195388	0.91[EUR][1000 genomes]
rs182230	0.84[EUR][1000 genomes]
rs2548581	0.92[EUR][1000 genomes]
rs2548582	0.92[EUR][1000 genomes]
rs2548583	0.92[EUR][1000 genomes]
rs256340	0.92[EUR][1000 genomes]
rs256341	0.91[EUR][1000 genomes]
rs26062	0.89[EUR][1000 genomes]
rs26065	0.92[EUR][1000 genomes]
rs26066	0.91[EUR][1000 genomes]
rs26068	0.91[EUR][1000 genomes]
rs26069	0.89[EUR][1000 genomes]
rs26071	0.92[EUR][1000 genomes]
rs27156	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs27244	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs27245	0.94[EUR][1000 genomes]
rs27251	0.94[EUR][1000 genomes]
rs27254	0.94[EUR][1000 genomes]
rs27264	0.82[EUR][1000 genomes]
rs27357	0.95[EUR][1000 genomes]
rs27465	0.92[EUR][1000 genomes]
rs27468	0.91[EUR][1000 genomes]
rs27469	0.91[EUR][1000 genomes]
rs27574	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs27609	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27627	0.91[EUR][1000 genomes]
rs27725	0.95[EUR][1000 genomes]
rs28085	0.95[EUR][1000 genomes]
rs282549	0.91[EUR][1000 genomes]
rs282550	0.91[EUR][1000 genomes]
rs282551	0.92[EUR][1000 genomes]
rs282552	0.91[EUR][1000 genomes]
rs282553	0.90[EUR][1000 genomes]
rs282557	0.85[EUR][1000 genomes]
rs282559	0.86[EUR][1000 genomes]
rs282561	0.86[EUR][1000 genomes]
rs32377	0.91[EUR][1000 genomes]
rs32378	0.91[EUR][1000 genomes]
rs32425	0.91[EUR][1000 genomes]
rs3763367	0.80[EUR][1000 genomes]
rs39613	0.94[EUR][1000 genomes]
rs39949	0.82[EUR][1000 genomes]
rs4029420	0.84[EUR][1000 genomes]
rs42284	0.92[EUR][1000 genomes]
rs4865628	0.81[EUR][1000 genomes]
rs578198	0.81[EUR][1000 genomes]
rs62366937	0.82[EUR][1000 genomes]
rs6450359	0.84[EUR][1000 genomes]
rs6450423	0.84[ASN][1000 genomes]
rs6869356	0.81[EUR][1000 genomes]
rs6872496	0.84[EUR][1000 genomes]
rs6886872	0.84[EUR][1000 genomes]
rs6890519	0.85[EUR][1000 genomes]
rs895801	0.84[EUR][1000 genomes]
rs921210	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462159	chr5:49960673-50229851	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv598108	chr5:49960673-50229851	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1034445	chr5:49986171-50492609	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv598116	chr5:50064292-50318550	Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:50155800-50160800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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