Variant report

Variant	rs41503747
Chromosome Location	chr3:143285118-143285119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11918424	1.00[MEX][hapmap]
rs7613014	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143256000-143305600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:143270600-143304800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr3:143277400-143292400	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:143277400-143301200	Weak transcription	Esophagus	oesophagus
5	chr3:143277400-143303600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:143277400-143310200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr3:143277600-143292400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr3:143278600-143285200	Weak transcription	Primary B cells from cord blood	blood
9	chr3:143279000-143296200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr3:143281400-143292200	Weak transcription	Primary T cells from cord blood	blood
11	chr3:143283200-143286200	Weak transcription	HUVEC	blood vessel
12	chr3:143283800-143286200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr3:143284000-143287200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:143284000-143306400	Weak transcription	Spleen	Spleen
15	chr3:143284200-143285600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr3:143284400-143285200	Enhancers	Fetal Lung	lung
17	chr3:143284400-143285400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:143284400-143285800	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr3:143284400-143287400	Enhancers	Fetal Intestine Small	intestine
20	chr3:143284400-143292600	Weak transcription	Brain Substantia Nigra	brain
21	chr3:143284400-143299200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr3:143284600-143285400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:143284600-143286800	Enhancers	Primary B cells from peripheral blood	blood
24	chr3:143284600-143287000	Enhancers	Fetal Intestine Large	intestine
25	chr3:143284800-143285200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:143284800-143285200	Enhancers	Adipose Nuclei	Adipose
27	chr3:143285000-143285200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr3:143285000-143285200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr3:143285000-143285400	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr3:143285000-143300400	Weak transcription	Brain Anterior Caudate	brain

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