Variant report

Variant	rs4151014
Chromosome Location	chr11:36593362-36593363
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11033707	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11033711	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11033722	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11033724	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11033728	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11826342	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273143	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273195	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278830	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279290	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12285096	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12285668	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12286658	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12286882	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12288629	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12288720	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12288887	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12292030	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13377530	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7120887	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs872814	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36586400-36595200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:36586600-36595000	Weak transcription	Left Ventricle	heart
3	chr11:36586600-36595200	Weak transcription	Right Ventricle	heart
4	chr11:36586800-36599400	Weak transcription	Liver	Liver
5	chr11:36586800-36600200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:36587000-36595000	Weak transcription	Pancreas	Pancrea
7	chr11:36587200-36595000	Weak transcription	Spleen	Spleen
8	chr11:36587200-36595200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:36587400-36594800	Active TSS	Thymus	Thymus
10	chr11:36589800-36595200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr11:36589800-36600800	Transcr. at gene 5' and 3'	Dnd41	blood
12	chr11:36590200-36596200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:36591600-36595000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:36593200-36597600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:36593200-36600800	Transcr. at gene 5' and 3'	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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