Variant report

Variant	rs41511044
Chromosome Location	chr4:55553046-55553047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1014537	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv3367952	chr4:55437113-55724644	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1009516	chr4:55548449-55560839	Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55537600-55554000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:55545600-55575800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:55545800-55562000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:55546800-55558000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:55548000-55561600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:55549000-55555200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:55549200-55559200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:55550400-55553400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr4:55550600-55553600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:55550800-55553600	Weak transcription	Fetal Thymus	thymus
11	chr4:55551000-55554400	Enhancers	Primary hematopoietic stem cells	blood
12	chr4:55551000-55554400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:55551200-55553600	Weak transcription	Primary T cells from cord blood	blood
14	chr4:55551200-55554200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr4:55551400-55554200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr4:55551800-55561800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:55552000-55553600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr4:55552000-55553600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr4:55552000-55556000	Enhancers	Primary B cells from peripheral blood	blood
20	chr4:55552200-55554200	Weak transcription	Brain Anterior Caudate	brain
21	chr4:55552200-55555600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:55552400-55554000	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:55552800-55554000	Enhancers	Primary B cells from cord blood	blood

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