Variant report

Variant	rs41525647
Chromosome Location	chr1:92001321-92001322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12041649	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91967800-92009600	Weak transcription	Thymus	Thymus
2	chr1:91983000-92002600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:91989400-92002800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:91994600-92002200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:91995400-92002200	Weak transcription	NHDF-Ad	bronchial
6	chr1:91995400-92002400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:91995800-92003000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:91996000-92002800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr1:91999200-92002800	Weak transcription	Fetal Heart	heart
10	chr1:91999200-92005800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr1:92001200-92001400	Enhancers	Primary T cells fromperipheralblood	blood
12	chr1:92001200-92001400	Enhancers	Lung	lung
13	chr1:92001200-92002000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:92001200-92005000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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