Variant report

Variant	rs41531444
Chromosome Location	chr10:44339185-44339186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr10:44338495-44339213	IMR90	lung:	n/a	chr10:44338946-44338955
2	CEBPB	chr10:44338677-44339536	IMR90	lung:	n/a	chr10:44338946-44338957

Variant related genes	Relation type
LINC00619	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17154506	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57678939	0.89[EUR][1000 genomes]
rs59230148	0.89[EUR][1000 genomes]
rs73275930	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7918642	1.00[GIH][hapmap];0.85[MEX][hapmap];0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs41531444	RAB2A	trans	lymphoblastoid	RTeQTL

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44335200-44339400	Weak transcription	Psoas Muscle	Psoas
2	chr10:44337000-44339400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:44337400-44342400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:44338000-44339200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:44338000-44339600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:44338200-44339800	Weak transcription	Lung	lung
7	chr10:44338200-44340200	Enhancers	Adipose Nuclei	Adipose
8	chr10:44338200-44340600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:44338200-44341200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:44338200-44341800	Enhancers	Osteobl	bone
11	chr10:44338200-44342200	Enhancers	Left Ventricle	heart
12	chr10:44338200-44342800	Enhancers	NHLF	lung
13	chr10:44338400-44339200	Enhancers	Fetal Muscle Trunk	muscle
14	chr10:44338400-44339400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:44338400-44339400	Enhancers	NH-A	brain
16	chr10:44338400-44339400	Flanking Active TSS	NHDF-Ad	bronchial
17	chr10:44338400-44339800	Weak transcription	Esophagus	oesophagus
18	chr10:44338400-44340200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:44338400-44342800	Enhancers	Fetal Muscle Leg	muscle
20	chr10:44338600-44339200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:44338600-44339200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:44338600-44339200	Enhancers	Spleen	Spleen
23	chr10:44338600-44339400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:44338600-44339400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr10:44338600-44339800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:44338600-44340200	Enhancers	HSMM	muscle
27	chr10:44338600-44340600	Weak transcription	Gastric	stomach
28	chr10:44338600-44341000	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr10:44338800-44339200	Enhancers	Aorta	Aorta
30	chr10:44338800-44339400	Enhancers	Fetal Lung	lung
31	chr10:44338800-44340400	Weak transcription	Stomach Mucosa	stomach
32	chr10:44338800-44340600	Weak transcription	Right Atrium	heart
33	chr10:44338800-44342200	Enhancers	HSMMtube	muscle
34	chr10:44339000-44339200	Enhancers	Colonic Mucosa	Colon
35	chr10:44339000-44339200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
36	chr10:44339000-44339200	Enhancers	Ovary	ovary
37	chr10:44339000-44340000	Enhancers	Fetal Stomach	stomach
38	chr10:44339000-44340600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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