Variant report

Variant	rs41535944
Chromosome Location	chr1:184736050-184736051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184726814..184728500-chr1:184735928..184737770,2	K562	blood:
2	chr1:184708496..184710858-chr1:184733789..184736072,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10911637	0.96[LWK][hapmap];1.00[MKK][hapmap]
rs12067111	0.85[AFR][1000 genomes]
rs12094196	0.86[YRI][hapmap];0.86[AFR][1000 genomes]
rs12096214	1.00[LWK][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs16823413	1.00[LWK][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes]
rs16823421	0.88[AFR][1000 genomes]
rs16823429	0.88[AFR][1000 genomes]
rs35779894	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35956708	0.82[EUR][1000 genomes]
rs55896922	0.85[AFR][1000 genomes]
rs56384325	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56741490	0.88[AFR][1000 genomes]
rs59085958	0.85[AFR][1000 genomes]
rs59862212	0.85[AFR][1000 genomes]
rs61022402	0.85[AFR][1000 genomes]
rs61823880	0.85[AFR][1000 genomes]
rs61823882	0.85[AFR][1000 genomes]
rs61823885	0.86[AFR][1000 genomes]
rs61823891	0.85[AFR][1000 genomes]
rs61823908	0.88[AFR][1000 genomes]
rs6681178	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs861578	0.87[YRI][hapmap]
rs861581	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001323	chr1:184525419-185315876	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv535222	chr1:184525419-185315876	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv832037	chr1:184568194-184756597	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv917126	chr1:184655366-184902273	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv832048	chr1:184660146-184858802	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184724800-184742600	Weak transcription	Gastric	stomach
2	chr1:184731400-184739800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:184731800-184737600	Weak transcription	Stomach Mucosa	stomach
4	chr1:184736000-184737000	Enhancers	K562	blood

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