Variant report

Variant	rs41555513
Chromosome Location	chr6:31323480-31323481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr6:31322211-31327077	IMR90	lung:	n/a	n/a
2	BCLAF1	chr6:31322541-31323765	GM12878	blood:	n/a	n/a
3	POLR2A	chr6:31321756-31325510	GM12878	blood:	n/a	n/a
4	POLR2A	chr6:31317673-31326364	GM12891	blood:	n/a	n/a
5	TBL1XR1	chr6:31323459-31323763	GM12878	blood:	n/a	n/a
6	POU2F2	chr6:31317961-31325451	GM12878	blood:	n/a	chr6:31322219-31322231
7	POLR2A	chr6:31317939-31326462	GM12892	blood:	n/a	n/a
8	USF2	chr6:31323102-31323885	GM12878	blood:	n/a	n/a
9	POLR2A	chr6:31323112-31323687	U87	brain:	n/a	n/a
10	MAX	chr6:31323265-31323552	GM12878	blood:	n/a	n/a
11	POLR2A	chr6:31322209-31325500	GM12878	blood:	n/a	n/a
12	POLR2A	chr6:31317763-31326416	GM12878	blood:	n/a	n/a
13	POLR2A	chr6:31318399-31324063	GM12891	blood:	n/a	n/a
14	POLR2A	chr6:31319294-31325417	GM18526	blood:	n/a	n/a
15	ELF1	chr6:31322673-31323534	GM12878	blood:	n/a	n/a
16	POLR2A	chr6:31317961-31326519	GM12892	blood:	n/a	n/a
17	POLR2A	chr6:31317721-31326503	GM12878	blood:	n/a	n/a
18	POU2F2	chr6:31323115-31323526	GM12878	blood:	n/a	n/a
19	POLR2A	chr6:31323326-31324057	GM12878	blood:	n/a	n/a
20	POLR2A	chr6:31318010-31326009	GM12891	blood:	n/a	n/a
21	CHD1	chr6:31323235-31325441	IMR90	lung:	n/a	n/a
22	STAT5A	chr6:31322207-31324005	GM12878	blood:	n/a	chr6:31322868-31322880 chr6:31323003-31323015
23	USF1	chr6:31323199-31323521	GM12878	blood:	n/a	n/a
24	POLR2A	chr6:31322894-31323572	H1-hESC	embryonic stem cell:	n/a	n/a
25	BCLAF1	chr6:31322776-31323862	GM12878	blood:	n/a	n/a
26	POLR2A	chr6:31318262-31325413	GM12878	blood:	n/a	n/a
27	POLR2A	chr6:31317900-31326472	GM12892	blood:	n/a	n/a
28	POLR2A	chr6:31318098-31325387	GM12878	blood:	n/a	n/a
29	WRNIP1	chr6:31323154-31323871	GM12878	blood:	n/a	n/a
30	POU2F2	chr6:31322455-31323527	GM12891	blood:	n/a	n/a
31	POLR2A	chr6:31321879-31323741	GM12878	blood:	n/a	n/a
32	POLR2A	chr6:31319402-31324224	GM12891	blood:	n/a	n/a
33	POLR2A	chr6:31317985-31326394	GM12892	blood:	n/a	n/a
34	POLR2A	chr6:31319521-31325437	GM19193	blood:	n/a	n/a
35	POLR2A	chr6:31322250-31325415	GM18951	blood:	n/a	n/a
36	POLR2A	chr6:31319538-31323652	GM12892	blood:	n/a	n/a
37	POLR2A	chr6:31317410-31325850	GM12891	blood:	n/a	n/a
38	POLR2A	chr6:31322074-31323720	HL-60	blood:	n/a	n/a
39	POLR2A	chr6:31318373-31325420	GM18505	blood:	n/a	n/a
40	PML	chr6:31322210-31324046	GM12878	blood:	n/a	n/a
41	MTA3	chr6:31317858-31326579	GM12878	blood:	n/a	n/a
42	POLR2A	chr6:31318401-31325430	GM19099	blood:	n/a	n/a
43	POLR2A	chr6:31323186-31323648	U87	brain:	n/a	n/a
44	POU2F2	chr6:31322182-31323597	GM12891	blood:	n/a	chr6:31322219-31322231

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:31238404..31240559-chr6:31321762..31324439,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271581	TF binding region
HLA-B	TF binding region
ENSG00000204525	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs41559422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60543763	1.00[ASN][1000 genomes]
rs61079385	1.00[ASN][1000 genomes]
rs61624501	1.00[ASN][1000 genomes]
rs62396264	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62396274	1.00[ASN][1000 genomes]
rs62400386	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62401893	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400359	1.00[ASN][1000 genomes]
rs73402206	1.00[ASN][1000 genomes]
rs73402213	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:104 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
4	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
6	nsv428140	chr6:31028290-31462106	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
7	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
8	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
9	nsv1019637	chr6:31104401-31354706	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
10	nsv1029569	chr6:31104401-31412740	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
11	nsv538174	chr6:31104401-31412740	Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
12	nsv1025909	chr6:31131121-31354706	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
13	nsv538175	chr6:31131121-31354706	Active TSS Bivalent Enhancer Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
14	nsv1015890	chr6:31131121-31449207	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
15	nsv538176	chr6:31131121-31449207	Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
16	nsv1024887	chr6:31162849-31354706	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
17	nsv538177	chr6:31162849-31354706	Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
18	nsv1015903	chr6:31162849-31412740	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
19	nsv538178	chr6:31162849-31412740	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
20	nsv1031682	chr6:31162849-31449207	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
21	nsv538179	chr6:31162849-31449207	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
22	esv3381377	chr6:31192213-31498578	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
23	esv3340592	chr6:31192248-31498535	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
24	nsv432867	chr6:31196671-31343862	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
25	nsv538180	chr6:31206639-31386279	Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
26	nsv1029142	chr6:31206639-31449207	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
27	nsv1021052	chr6:31206639-31485736	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
28	esv3328153	chr6:31230846-31327330	Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
29	esv3475034	chr6:31234427-31327274	Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
30	esv3475035	chr6:31234427-31327274	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
31	nsv601503	chr6:31237229-31336891	Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
32	nsv601507	chr6:31237586-31339844	Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
33	esv6770	chr6:31238482-31323891	Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
34	esv6835	chr6:31239761-31325507	Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
35	esv7127	chr6:31240823-31326158	Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
36	esv3512386	chr6:31241246-31326307	Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
37	esv3512387	chr6:31241246-31326307	Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
38	esv2752834	chr6:31242621-31343821	Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
39	esv3447150	chr6:31242780-31326059	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
40	esv3374087	chr6:31250655-31330669	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
41	esv2757161	chr6:31251360-31335707	Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
42	nsv1029526	chr6:31256354-31449207	Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
43	nsv538181	chr6:31256354-31449207	Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
44	esv1804322	chr6:31269577-31326162	Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
45	nsv1029508	chr6:31269776-31445712	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
46	nsv538182	chr6:31269776-31445712	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
47	esv1830805	chr6:31269777-31450100	Flanking Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
48	esv33563	chr6:31275505-31453668	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
49	nsv601570	chr6:31276751-31451476	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
50	nsv1018705	chr6:31277798-31337397	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31319600-31323800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:31319800-31323600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:31320400-31324200	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
4	chr6:31320400-31324800	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
5	chr6:31320600-31324000	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
6	chr6:31320600-31324400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
7	chr6:31320600-31324600	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood
8	chr6:31320800-31324000	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
9	chr6:31320800-31324000	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
10	chr6:31320800-31324200	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
11	chr6:31320800-31325400	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
12	chr6:31321000-31323800	Weak transcription	Dnd41	blood
13	chr6:31321000-31324000	Transcr. at gene 5' and 3'	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:31321200-31323600	Strong transcription	Fetal Intestine Small	intestine
15	chr6:31321200-31324000	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
16	chr6:31321200-31324000	Transcr. at gene 5' and 3'	Primary T helper naive cells from peripheral blood	blood
17	chr6:31321200-31324000	Transcr. at gene 5' and 3'	Primary T killer naive cells fromperipheralblood	blood
18	chr6:31321200-31324000	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 29	rectum
19	chr6:31321200-31324000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
20	chr6:31321200-31324600	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:31321200-31324600	Transcr. at gene 5' and 3'	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:31321200-31325000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:31321400-31323800	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:31321400-31324000	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:31321400-31324000	Transcr. at gene 5' and 3'	Primary T killer memory cells from peripheral blood	blood
26	chr6:31321400-31324000	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 31	rectum
27	chr6:31321600-31323800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:31321800-31323600	Weak transcription	Hela-S3	cervix
29	chr6:31321800-31324000	Transcr. at gene 5' and 3'	Primary monocytes fromperipheralblood	blood
30	chr6:31321800-31324000	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:31321800-31324000	Transcr. at gene 5' and 3'	Colonic Mucosa	Colon
32	chr6:31321800-31324200	Transcr. at gene 5' and 3'	Thymus	Thymus
33	chr6:31322200-31324000	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:31322200-31324000	Transcr. at gene 5' and 3'	Lung	lung
35	chr6:31322200-31324000	Transcr. at gene 5' and 3'	Sigmoid Colon	Sigmoid Colon
36	chr6:31322200-31324000	Transcr. at gene 5' and 3'	Spleen	Spleen
37	chr6:31322200-31324200	Transcr. at gene 5' and 3'	Adipose Nuclei	Adipose
38	chr6:31322400-31323600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:31322400-31323600	Transcr. at gene 5' and 3'	Brain Hippocampus Middle	brain
40	chr6:31322400-31323800	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
41	chr6:31322400-31323800	Transcr. at gene 5' and 3'	Duodenum Smooth Muscle	Duodenum
42	chr6:31322400-31323800	Transcr. at gene 5' and 3'	Rectal Smooth Muscle	rectum
43	chr6:31322400-31323800	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
44	chr6:31322400-31324000	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
45	chr6:31322400-31324200	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
46	chr6:31322600-31323600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells	blood
47	chr6:31322600-31323600	Bivalent/Poised TSS	Psoas Muscle	Psoas
48	chr6:31322600-31323800	Transcr. at gene 5' and 3'	Gastric	stomach
49	chr6:31322600-31324000	Transcr. at gene 5' and 3'	Stomach Mucosa	stomach
50	chr6:31322800-31323600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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