Variant report

Variant	rs41729
Chromosome Location	chr7:139658582-139658583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:139639209..139641304-chr7:139657486..139660196,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28462	0.96[ASN][1000 genomes]
rs41724	0.95[ASN][1000 genomes]
rs41726	0.98[ASN][1000 genomes]
rs41727	0.98[ASN][1000 genomes]
rs41728	1.00[ASN][1000 genomes]
rs4725563	0.88[EUR][1000 genomes]
rs8192835	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv831156	chr7:139532318-139694326	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139646800-139658600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:139647000-139660600	Weak transcription	K562	blood
3	chr7:139651400-139662400	Weak transcription	Pancreas	Pancrea
4	chr7:139651400-139670000	Weak transcription	Gastric	stomach
5	chr7:139652000-139668400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr7:139652200-139691600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:139652800-139668000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:139653000-139678200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr7:139653200-139672200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:139653200-139678000	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr7:139653400-139659800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:139653400-139676000	Weak transcription	Adipose Nuclei	Adipose
13	chr7:139653600-139661600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:139654600-139677600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr7:139655000-139660400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:139655000-139667800	Weak transcription	Colonic Mucosa	Colon
17	chr7:139655000-139677800	Weak transcription	Primary B cells from cord blood	blood
18	chr7:139655200-139660200	Strong transcription	Spleen	Spleen
19	chr7:139656000-139659000	Strong transcription	Fetal Thymus	thymus
20	chr7:139656400-139660400	Strong transcription	Primary hematopoietic stem cells	blood
21	chr7:139656800-139660200	Enhancers	Fetal Stomach	stomach
22	chr7:139657400-139664600	Weak transcription	Lung	lung
23	chr7:139657800-139658600	Strong transcription	Primary T cells from cord blood	blood
24	chr7:139657800-139659200	Enhancers	Fetal Kidney	kidney
25	chr7:139657800-139660400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:139658000-139658600	Enhancers	Brain Germinal Matrix	brain
27	chr7:139658000-139659600	Weak transcription	Thymus	Thymus
28	chr7:139658200-139658600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr7:139658400-139658600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr7:139658400-139658600	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr7:139658400-139658800	Enhancers	H1 Cell Line	embryonic stem cell
32	chr7:139658400-139660200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:139658400-139661200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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