Variant report

Variant	rs41848
Chromosome Location	chr7:69016574-69016575
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69016244..69018327-chr7:69022905..69025078,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1003404	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10260553	0.92[ASN][1000 genomes]
rs10487947	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12670658	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1548748	0.92[ASN][1000 genomes]
rs17140651	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17140890	0.89[ASN][1000 genomes]
rs1990444	0.92[ASN][1000 genomes]
rs210602	0.92[ASN][1000 genomes]
rs210605	0.92[ASN][1000 genomes]
rs2215354	0.87[ASN][1000 genomes]
rs2533436	0.87[ASN][1000 genomes]
rs2533437	0.92[ASN][1000 genomes]
rs2851486	0.92[ASN][1000 genomes]
rs2851493	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2851519	0.87[ASN][1000 genomes]
rs2851520	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34201872	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34387293	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34650051	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34824391	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35187398	0.83[AMR][1000 genomes]
rs35241473	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35351867	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35960270	0.83[AMR][1000 genomes]
rs41854	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41857	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4717522	0.92[ASN][1000 genomes]
rs548556	0.92[ASN][1000 genomes]
rs569334	0.92[ASN][1000 genomes]
rs628885	0.92[ASN][1000 genomes]
rs633927	0.92[ASN][1000 genomes]
rs917617	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69014800-69017400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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