Variant report

Variant	rs42098
Chromosome Location	chr7:27713512-27713513
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27711761..27713688-chr7:27715635..27717751,2	K562	blood:
2	chr7:27711391..27713940-chr7:27779282..27782238,3	K562	blood:

Variant related genes	Relation type
ENSG00000229893	Chromatin interaction
ENSG00000106052	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10081338	0.92[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10081339	0.92[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10486548	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10951173	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11764753	0.86[AFR][1000 genomes]
rs12531518	0.89[AFR][1000 genomes]
rs12540063	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12700823	0.89[AFR][1000 genomes]
rs12700824	0.82[ASN][1000 genomes]
rs12700825	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12700829	0.92[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12700830	0.92[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2160125	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2391447	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2391448	0.82[ASN][1000 genomes]
rs2391451	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2391454	0.92[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs42087	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs42088	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs42104	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs42113	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4722726	1.00[ASN][1000 genomes]
rs6462039	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6462042	0.86[EUR][1000 genomes]
rs6943883	0.82[ASN][1000 genomes]
rs6946305	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6954905	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6957378	0.92[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6966091	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7779990	0.82[ASN][1000 genomes]
rs7782422	0.81[AFR][1000 genomes]
rs7806415	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7808275	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs961723	0.89[AFR][1000 genomes]
rs961724	0.89[AFR][1000 genomes]
rs961725	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs42098	TAX1BP1	Cis_1M	lymphoblastoid	RTeQTL
rs42098	HIBADH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27711400-27716200	Weak transcription	NHDF-Ad	bronchial
2	chr7:27711400-27717000	Weak transcription	K562	blood

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