Variant report

Variant	rs4235234
Chromosome Location	chr4:151138020-151138021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:150920364..150921270-chr4:151137842..151139045,6	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2359926	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3922818	1.00[CEU][hapmap]
rs4325992	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6854029	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151114200-151154200	Weak transcription	Aorta	Aorta
2	chr4:151128400-151138200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr4:151130600-151156000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:151132600-151138200	Weak transcription	Fetal Brain Female	brain
5	chr4:151132600-151143200	Weak transcription	Fetal Stomach	stomach
6	chr4:151132800-151150400	Weak transcription	Pancreas	Pancrea
7	chr4:151133200-151138400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:151133200-151145600	Weak transcription	HSMMtube	muscle
9	chr4:151133200-151150400	Weak transcription	Right Ventricle	heart
10	chr4:151133400-151138200	Weak transcription	Fetal Lung	lung
11	chr4:151133400-151150400	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:151133800-151141000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:151134400-151138200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:151134600-151138200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:151134600-151138200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:151134600-151141600	Weak transcription	HSMM	muscle
17	chr4:151135400-151139600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:151136400-151138200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:151136400-151138200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:151136400-151138800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:151136400-151139800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:151136400-151140000	Enhancers	Fetal Heart	heart
23	chr4:151136400-151141600	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr4:151136400-151142200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr4:151136600-151138400	Enhancers	Placenta Amnion	Placenta Amnion
26	chr4:151136600-151140000	Enhancers	A549	lung
27	chr4:151137000-151138200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr4:151137000-151146000	Weak transcription	Left Ventricle	heart
29	chr4:151137600-151138200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:151137600-151138200	Enhancers	Brain Angular Gyrus	brain
31	chr4:151137600-151139600	Enhancers	Fetal Brain Male	brain
32	chr4:151137600-151139800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr4:151137800-151139000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr4:151137800-151139600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:151137800-151139600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr4:151137800-151139800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr4:151137800-151139800	Enhancers	Brain Anterior Caudate	brain
38	chr4:151138000-151138200	Flanking Active TSS	Brain Substantia Nigra	brain
39	chr4:151138000-151138400	Enhancers	Stomach Smooth Muscle	stomach
40	chr4:151138000-151138600	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr4:151138000-151138600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr4:151138000-151138600	Flanking Active TSS	Brain Hippocampus Middle	brain
43	chr4:151138000-151138800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:151138000-151138800	Enhancers	H9 Cell Line	embryonic stem cell
45	chr4:151138000-151138800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr4:151138000-151138800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr4:151138000-151138800	Flanking Active TSS	Brain Germinal Matrix	brain
48	chr4:151138000-151138800	Enhancers	Colon Smooth Muscle	Colon
49	chr4:151138000-151138800	Enhancers	Fetal Kidney	kidney
50	chr4:151138000-151138800	Enhancers	Pancreatic Islets	Pancreatic Islet

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