Variant report

Variant	rs4235376
Chromosome Location	chr4:15339942-15339943
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15333755..15336308-chr4:15339247..15341290,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1024757	1.00[LWK][hapmap];1.00[MKK][hapmap]
rs1990525	0.87[AFR][1000 genomes]
rs2252240	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2465500	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4235376	FAM200B	cis	parietal	SCAN

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15330000-15341200	Weak transcription	Ovary	ovary
2	chr4:15334000-15341200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:15334800-15341400	Weak transcription	Aorta	Aorta
4	chr4:15335800-15341600	Weak transcription	Adipose Nuclei	Adipose
5	chr4:15335800-15342400	Weak transcription	Placenta	Placenta
6	chr4:15336200-15351400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr4:15337200-15340000	Weak transcription	Fetal Lung	lung
8	chr4:15337200-15341200	Weak transcription	Fetal Stomach	stomach
9	chr4:15337800-15340200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:15338000-15340200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:15338000-15341600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:15338200-15340600	Enhancers	NHLF	lung
13	chr4:15338400-15341400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:15338400-15342600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:15338400-15342800	Weak transcription	Lung	lung
16	chr4:15338400-15343200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr4:15338600-15340400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:15338600-15342400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:15338600-15342400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:15338600-15342400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:15338600-15343000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr4:15338600-15343400	Weak transcription	Spleen	Spleen
23	chr4:15338600-15346600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr4:15338600-15346600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr4:15338800-15345400	Weak transcription	NH-A	brain
26	chr4:15339000-15341400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:15339200-15340000	Enhancers	Fetal Brain Male	brain
28	chr4:15339200-15340400	Enhancers	Colon Smooth Muscle	Colon
29	chr4:15339200-15340400	Enhancers	Rectal Smooth Muscle	rectum
30	chr4:15339200-15341200	Enhancers	Stomach Smooth Muscle	stomach
31	chr4:15339600-15342600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr4:15339800-15340000	Enhancers	Fetal Kidney	kidney

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