Variant report

Variant	rs4235396
Chromosome Location	chr4:18575715-18575716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10516324	0.83[EUR][1000 genomes]
rs10939791	0.82[EUR][1000 genomes]
rs11727712	0.82[EUR][1000 genomes]
rs11727777	0.82[EUR][1000 genomes]
rs11728685	0.86[EUR][1000 genomes]
rs11729200	0.84[EUR][1000 genomes]
rs11937623	0.86[EUR][1000 genomes]
rs13101844	0.87[EUR][1000 genomes]
rs13105376	0.83[EUR][1000 genomes]
rs13105996	0.86[EUR][1000 genomes]
rs13124256	0.82[EUR][1000 genomes]
rs13124435	0.87[EUR][1000 genomes]
rs13124829	0.87[EUR][1000 genomes]
rs13126168	0.85[EUR][1000 genomes]
rs13147042	0.83[EUR][1000 genomes]
rs13147682	0.82[EUR][1000 genomes]
rs13148145	0.83[EUR][1000 genomes]
rs13149685	0.83[EUR][1000 genomes]
rs13152448	0.82[EUR][1000 genomes]
rs1382097	0.82[EUR][1000 genomes]
rs17468474	0.87[EUR][1000 genomes]
rs4235395	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66461394	0.84[EUR][1000 genomes]
rs66654225	0.88[EUR][1000 genomes]
rs66900680	0.84[EUR][1000 genomes]
rs67171630	0.84[EUR][1000 genomes]
rs67314558	0.84[EUR][1000 genomes]
rs6813428	0.83[EUR][1000 genomes]
rs6846041	0.86[EUR][1000 genomes]
rs924970	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18574400-18579800	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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