Variant report
| Variant | rs4235428 |
|---|---|
| Chromosome Location | chr4:98067407-98067408 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10021132 | 0.82[ASN][1000 genomes] |
| rs10029947 | 0.82[ASN][1000 genomes] |
| rs11097553 | 0.82[ASN][1000 genomes] |
| rs11936576 | 0.89[ASN][1000 genomes] |
| rs11941787 | 0.82[ASN][1000 genomes] |
| rs11943896 | 0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs13134423 | 0.88[ASN][1000 genomes] |
| rs1462763 | 0.82[ASN][1000 genomes] |
| rs28378393 | 0.82[ASN][1000 genomes] |
| rs34817974 | 0.82[ASN][1000 genomes] |
| rs4075059 | 1.00[ASN][1000 genomes] |
| rs4295269 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4295270 | 0.86[ASN][1000 genomes] |
| rs4301123 | 1.00[ASN][1000 genomes] |
| rs4305515 | 0.82[ASN][1000 genomes] |
| rs4317212 | 0.84[ASN][1000 genomes] |
| rs4359906 | 0.82[ASN][1000 genomes] |
| rs4407512 | 0.89[ASN][1000 genomes] |
| rs4443291 | 0.89[ASN][1000 genomes] |
| rs4538486 | 0.82[ASN][1000 genomes] |
| rs4540053 | 0.89[ASN][1000 genomes] |
| rs4599417 | 0.98[ASN][1000 genomes] |
| rs4643817 | 0.89[ASN][1000 genomes] |
| rs4699304 | 0.96[ASN][1000 genomes] |
| rs4699307 | 0.89[ASN][1000 genomes] |
| rs4699308 | 0.89[ASN][1000 genomes] |
| rs58721082 | 0.87[ASN][1000 genomes] |
| rs6532664 | 0.82[ASN][1000 genomes] |
| rs6825931 | 0.84[ASN][1000 genomes] |
| rs6855655 | 0.99[ASN][1000 genomes] |
| rs6858100 | 0.84[ASN][1000 genomes] |
| rs7670330 | 0.97[ASN][1000 genomes] |
| rs7684189 | 0.82[ASN][1000 genomes] |
| rs9784400 | 0.89[ASN][1000 genomes] |
| rs9917982 | 1.00[CHB][hapmap] |
| rs9994700 | 1.00[ASN][1000 genomes] |
| rs9997275 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879640 | chr4:97711707-98697586 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1002766 | chr4:98006688-98128416 | Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv537192 | chr4:98006688-98128416 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:98063800-98067800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
