Variant report

Variant	rs4236035
Chromosome Location	chr6:25218652-25218653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:25218628-25218708	MCF-7	breast:	n/a	n/a
2	CTCF	chr6:25218580-25218730	SAEC	small airway:	n/a	n/a
3	CTCF	chr6:25218560-25218710	NHEK	skin:	n/a	n/a
4	MYC	chr6:25218627-25218727	MCF-7	breast:	n/a	n/a
5	CTCF	chr6:25218621-25218767	NHEK	skin:	n/a	n/a
6	CTCF	chr6:25218560-25218710	HEEpiC	esophagus:	n/a	n/a

Variant related genes	Relation type
ENSG00000219681	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2328873	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7761347	0.93[AFR][1000 genomes]
rs9379737	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1025694	chr6:25136860-25309450	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1020774	chr6:25154152-25285679	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv538161	chr6:25154152-25285679	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv462663	chr6:25156197-25234884	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv601167	chr6:25156197-25234884	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv883483	chr6:25200842-25272435	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25203000-25219200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:25215800-25219600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:25216600-25219600	Weak transcription	Hela-S3	cervix
4	chr6:25217000-25219000	Enhancers	Brain Germinal Matrix	brain
5	chr6:25217600-25219600	Enhancers	Fetal Muscle Leg	muscle
6	chr6:25217800-25218800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:25217800-25219000	Enhancers	Fetal Brain Female	brain
8	chr6:25217800-25220200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:25218000-25218800	Active TSS	Placenta Amnion	Placenta Amnion
10	chr6:25218000-25219000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:25218000-25219000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:25218000-25219400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:25218200-25218800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:25218200-25218800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:25218200-25218800	Active TSS	Placenta	Placenta
16	chr6:25218200-25219000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:25218200-25219200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:25218200-25219800	Weak transcription	NHDF-Ad	bronchial
19	chr6:25218200-25219800	Flanking Active TSS	NHEK	skin
20	chr6:25218200-25220200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:25218200-25223600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:25218200-25223800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:25218200-25224000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:25218400-25218800	Active TSS	Fetal Thymus	thymus
25	chr6:25218400-25219400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:25218400-25219600	Enhancers	Fetal Muscle Trunk	muscle
27	chr6:25218600-25219000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:25218600-25219000	Flanking Active TSS	Esophagus	oesophagus
29	chr6:25218600-25219600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:25218600-25221200	Enhancers	HMEC	breast

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