Variant report

Variant	rs4236740
Chromosome Location	chr8:130227504-130227505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11777669	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13269074	0.85[ASN][1000 genomes]
rs4236739	0.87[ASN][1000 genomes]
rs4263726	0.85[ASN][1000 genomes]
rs4338066	0.87[ASN][1000 genomes]
rs4367503	0.89[ASN][1000 genomes]
rs6470707	0.89[ASN][1000 genomes]
rs6990350	0.96[ASN][1000 genomes]
rs7016377	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7821904	0.81[ASN][1000 genomes]
rs7824296	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831460	chr8:130185680-130366217	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv612229	chr8:130213203-130252229	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130208200-130241600	Weak transcription	Thymus	Thymus
2	chr8:130227000-130229800	Strong transcription	Fetal Thymus	thymus
3	chr8:130227000-130233600	Genic enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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