Variant report

Variant	rs4237041
Chromosome Location	chr8:61781481-61781482
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHD7-2	chr8:61781100-61783405	NONHSAT126850

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10086310	0.85[CEU][hapmap]
rs10092214	1.00[YRI][hapmap]
rs10094382	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10106752	1.00[YRI][hapmap]
rs1017861	1.00[YRI][hapmap]
rs1017862	1.00[YRI][hapmap]
rs12680437	1.00[YRI][hapmap]
rs13253647	1.00[YRI][hapmap]
rs17826359	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3763591	0.90[CHB][hapmap]
rs3814483	1.00[YRI][hapmap]
rs4237040	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4288413	1.00[YRI][hapmap]
rs4342642	0.85[CEU][hapmap];0.85[CHB][hapmap];0.83[TSI][hapmap]
rs4738813	1.00[YRI][hapmap]
rs4738816	1.00[YRI][hapmap]
rs4738817	1.00[YRI][hapmap]
rs4738834	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6985168	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs876957	1.00[YRI][hapmap]
rs900503	1.00[YRI][hapmap]
rs900504	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv890946	chr8:61726879-61802076	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61753200-61782000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:61769600-61783000	Weak transcription	Small Intestine	intestine
3	chr8:61769600-61784000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:61769600-61785200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:61769800-61788400	Weak transcription	Fetal Brain Female	brain
6	chr8:61774600-61784200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:61775200-61789000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:61775400-61790800	Weak transcription	Fetal Kidney	kidney
9	chr8:61776000-61784200	Weak transcription	NHEK	skin
10	chr8:61776600-61784200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:61777600-61784800	Weak transcription	K562	blood
12	chr8:61778000-61789600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:61778200-61784600	Weak transcription	Brain Germinal Matrix	brain
14	chr8:61778400-61782800	Weak transcription	Spleen	Spleen
15	chr8:61778400-61783600	Weak transcription	HUVEC	blood vessel
16	chr8:61778400-61783800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr8:61778400-61783800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr8:61778400-61784200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr8:61778400-61788600	Weak transcription	Pancreas	Pancrea
20	chr8:61778400-61789600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:61778600-61781600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:61778600-61781800	Weak transcription	Lung	lung
23	chr8:61778600-61782000	Enhancers	Brain Substantia Nigra	brain
24	chr8:61778600-61782400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr8:61778600-61783000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr8:61778600-61783800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr8:61778600-61788600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr8:61778600-61792800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr8:61778800-61784000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr8:61778800-61784200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr8:61778800-61788600	Weak transcription	Fetal Lung	lung
32	chr8:61778800-61789800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr8:61779000-61783800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr8:61779200-61781600	Weak transcription	Liver	Liver
35	chr8:61779200-61783800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr8:61779200-61785800	Weak transcription	Fetal Stomach	stomach
37	chr8:61779400-61782200	Enhancers	Primary T cells from cord blood	blood
38	chr8:61779400-61784000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr8:61779400-61784400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr8:61779600-61782000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
41	chr8:61779800-61784000	Weak transcription	HMEC	breast
42	chr8:61779800-61785000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr8:61780000-61781600	Weak transcription	Adipose Nuclei	Adipose
44	chr8:61780000-61781600	Weak transcription	HSMM	muscle
45	chr8:61780000-61782200	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr8:61780000-61787800	Weak transcription	Left Ventricle	heart
47	chr8:61780000-61788000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr8:61780000-61788600	Weak transcription	HSMMtube	muscle
49	chr8:61780200-61784000	Weak transcription	Brain Anterior Caudate	brain
50	chr8:61780200-61784200	Weak transcription	Brain Angular Gyrus	brain

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