Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25867129..25868995-chr10:25875572..25877987,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10741095	0.85[EUR][1000 genomes]
rs10828829	0.96[CEU][hapmap];0.84[CHB][hapmap];0.93[EUR][1000 genomes]
rs10828830	0.92[EUR][1000 genomes]
rs10828831	0.93[EUR][1000 genomes]
rs11014617	0.96[CEU][hapmap];0.84[CHB][hapmap];0.93[EUR][1000 genomes]
rs11014618	0.96[CEU][hapmap];0.84[CHB][hapmap];0.93[EUR][1000 genomes]
rs11014632	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs11818706	0.93[JPT][hapmap]
rs12246035	0.96[CEU][hapmap];0.84[CHB][hapmap];0.93[EUR][1000 genomes]
rs12268257	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1335193	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs1335194	0.93[EUR][1000 genomes]
rs34874972	0.89[EUR][1000 genomes]
rs3802512	0.92[JPT][hapmap]
rs4237371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749049	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4749051	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7094025	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72790305	0.93[EUR][1000 genomes]
rs9299793	0.85[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv894972	chr10:25849998-25917909	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25861600-25873800	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search: